Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.3e-142 508.8 252 100.0
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 9.3e-107 390.6 255 76.5
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.0e-105 387.1 252 75.8
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.1e-103 379.4 252 73.0
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.8e-102 376.3 252 73.0
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 3.1e-102 375.6 252 73.8
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.0e-102 375.2 250 71.6
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.7e-100 369.8 253 73.1
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 2.2e-100 369.4 252 71.4
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.2e-100 369.4 252 72.6
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 2.2e-100 369.4 252 73.0
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.9e-100 369.0 252 72.2
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 3.8e-100 368.6 252 71.4
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 3.8e-100 368.6 252 71.4
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 6.4e-100 367.9 252 71.8
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.1e-99 367.1 252 70.2
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.4e-99 366.7 252 71.0
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.4e-99 366.7 252 71.8
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 3.2e-99 365.5 252 73.4
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 7.1e-99 364.4 252 69.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.2e-98 363.6 250 70.8
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.2e-98 363.6 252 70.2
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.6e-98 363.2 250 70.0
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 2.1e-98 362.8 252 69.4
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 3.5e-98 362.1 253 70.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.6e-98 361.7 252 69.8
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 4.6e-98 361.7 252 69.4
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 7.9e-98 360.9 263 67.7
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 7.9e-98 360.9 252 72.2
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 7.9e-98 360.9 251 71.7
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 7.9e-98 360.9 252 69.0
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.0e-97 360.5 252 69.4
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.0e-97 360.5 252 67.9
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.3e-97 360.1 252 69.4
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 1.8e-97 359.8 252 68.7
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.3e-97 359.4 252 71.4
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.3e-97 359.4 252 68.7
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 5.1e-97 358.2 252 69.8
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 5.1e-97 358.2 252 69.8
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 5.1e-97 358.2 252 72.6
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 5.1e-97 358.2 250 66.8
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 5.1e-97 358.2 254 67.7
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 6.7e-97 357.8 251 72.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 6.7e-97 357.8 252 68.3
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 6.7e-97 357.8 252 69.4
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 8.7e-97 357.5 252 70.6
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.5e-96 356.7 252 68.7
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.9e-96 356.3 251 67.7
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.9e-96 356.3 252 70.6
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.9e-96 356.3 248 69.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 2.5e-96 355.9 252 67.9
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 2.5e-96 355.9 252 68.3
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.5e-96 355.9 252 72.2
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.3e-96 355.5 252 67.9
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 4.3e-96 355.1 252 69.4
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 4.3e-96 355.1 252 69.4
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.3e-96 355.1 252 67.5
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 5.6e-96 354.8 252 72.2
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 5.6e-96 354.8 243 69.1
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 7.4e-96 354.4 250 67.6
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 9.6e-96 354.0 252 69.8
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 9.6e-96 354.0 252 69.0
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.3e-95 353.6 252 66.7
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.1e-95 352.8 252 69.4
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.1e-95 352.8 252 69.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 2.1e-95 352.8 252 69.4
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.7e-95 352.1 252 67.1
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 4.8e-95 351.7 252 70.6
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.8e-95 351.7 252 71.8
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.2e-95 351.3 252 67.9
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 8.1e-95 350.9 252 67.1
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.1e-94 350.5 252 70.6
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.1e-94 350.5 252 70.2
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.4e-94 350.1 253 68.0
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.4e-94 350.1 252 67.9
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.8e-94 349.7 252 70.6
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.4e-94 349.4 252 70.6
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.4e-94 349.4 252 71.4
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.0e-94 348.6 253 65.2
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 6.9e-94 347.8 252 69.8
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.5e-93 346.7 252 69.8
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.5e-93 346.7 252 69.8
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.0e-93 346.3 252 67.5
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 5.8e-93 344.7 249 67.5
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 7.6e-93 344.4 252 67.5
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.9e-93 344.0 252 64.3
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.2e-92 342.8 245 68.2
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.8e-92 342.0 252 66.7
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 4.9e-92 341.7 249 67.5
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.4e-92 341.3 248 69.8
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.4e-92 341.3 248 69.8
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.1e-91 340.5 252 70.6
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.5e-91 339.3 254 64.2
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.2e-91 339.0 248 69.4
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 9.3e-91 337.4 254 64.2
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.2e-90 337.0 255 66.7
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 2.1e-90 336.3 274 62.0
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 2.1e-90 336.3 274 62.0
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.5e-90 335.5 252 63.9
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 4.6e-90 335.1 252 67.5
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.8e-89 333.2 245 67.3
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.8e-89 333.2 245 67.3
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.3e-89 332.8 251 65.3
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 5.1e-89 331.6 250 64.0
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 8.7e-89 330.9 245 66.9
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.1e-88 330.5 249 67.1
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 1.5e-88 330.1 249 66.3
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 7.4e-88 327.8 255 65.1
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 3.7e-87 325.5 249 65.1
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.5e-85 320.1 252 63.1
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 3.4e-85 318.9 245 67.3
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 7.6e-85 317.8 294 56.5
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.7e-84 316.6 291 57.7
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.2e-84 316.2 227 68.3
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.5e-84 314.7 244 61.9
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-83 313.5 244 61.9
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 3.2e-83 312.4 245 64.5
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 1.6e-82 310.1 175 84.6
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 3.5e-82 308.9 185 80.0
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 4.6e-82 308.5 241 61.8
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 2.3e-81 306.2 251 61.8
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 3.9e-81 305.4 252 61.5
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.2e-79 299.7 240 62.9
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 2.2e-79 299.7 252 59.9
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.2e-79 299.7 249 61.4
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 4.8e-79 298.5 185 77.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 8.2e-79 297.7 244 63.1
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 9.0e-78 294.3 202 72.3
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 2.9e-76 289.3 252 58.7
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 5.1e-73 278.5 248 58.5
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 9.4e-67 257.7 147 83.0
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 9.4e-67 257.7 147 83.0
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 3.6e-66 255.8 151 79.5
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 6.5e-60 235.0 179 60.9
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 3.2e-59 232.6 188 62.8
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.5e-56 223.8 184 65.8
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 4.1e-54 215.7 180 57.8
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 6.5e-52 208.4 175 61.1
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 5.7e-48 195.3 193 54.9
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 5.7e-48 195.3 193 54.9
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 9.4e-43 177.9 195 52.8
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.8e-41 173.7 110 74.5
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.0e-37 160.2 141 51.8
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.7e-36 157.1 88 81.8
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 4.2e-35 152.5 139 54.7
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.3e-28 130.2 73 82.2
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 6.6e-28 128.6 174 40.2
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 3.6e-26 122.9 63 87.3
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 7.5e-24 115.2 75 70.7
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 4.1e-22 109.4 168 38.7
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 2.7e-21 106.7 99 55.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 2.7e-21 106.7 99 55.6
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 6.0e-21 105.5 108 57.4
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 4.3e-19 99.4 75 66.7
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 9.8e-16 88.2 83 61.4
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 1.6e-13 80.9 94 52.1
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 3.6e-10 69.7 182 29.1
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 3.6e-10 69.7 237 29.5
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 6.8e-09 65.5 51 58.8
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.3e-07 61.2 189 27.0
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 1.1e-06 58.2 124 36.3
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 7.1e-06 55.5 38 68.4


User provided reference genes

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