Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 1.2e-92 343.2 176 100.0
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 3.1e-40 169.1 156 60.9
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 3.7e-38 162.2 167 54.5
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 6.4e-38 161.4 137 59.1
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 4.6e-36 155.2 118 62.7
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 1.7e-35 153.3 161 52.8
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 3.0e-35 152.5 166 51.8
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 5.1e-35 151.8 124 61.3
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 8.6e-35 151.0 169 52.1
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 1.9e-34 149.8 116 62.1
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 3.3e-34 149.1 145 56.6
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 9.5e-34 147.5 166 50.6
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 1.2e-33 147.1 167 49.7
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.6e-33 146.7 171 48.5
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.1e-33 146.4 173 47.4
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 2.8e-33 146.0 185 48.1
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 3.6e-33 145.6 166 47.6
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 8.1e-33 144.4 136 59.6
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 1.1e-32 144.1 119 60.5
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 1.4e-32 143.7 150 51.3
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 1.4e-32 143.7 161 52.2
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 1.4e-32 143.7 166 47.0
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 1.4e-32 143.7 155 52.3
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 1.4e-32 143.7 112 60.7
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 1.8e-32 143.3 123 60.2
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 1.8e-32 143.3 117 59.0
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 1.8e-32 143.3 133 55.6
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.4e-32 142.9 135 59.3
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.1e-32 142.5 164 48.8
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.1e-32 142.5 167 49.1
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 5.2e-32 141.7 166 46.4
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 8.9e-32 141.0 123 59.3
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 8.9e-32 141.0 164 47.0
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 1.2e-31 140.6 165 49.1
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 1.2e-31 140.6 151 51.7
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 1.2e-31 140.6 155 51.6
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 1.2e-31 140.6 155 50.3
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 1.2e-31 140.6 116 59.5
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 2.0e-31 139.8 119 59.7
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 3.4e-31 139.0 153 49.7
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 4.4e-31 138.7 159 51.6
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 5.8e-31 138.3 113 58.4
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 7.6e-31 137.9 103 64.1
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 7.6e-31 137.9 155 52.3
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 7.6e-31 137.9 151 49.0
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 9.9e-31 137.5 162 49.4
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 1.3e-30 137.1 152 52.0
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 1.7e-30 136.7 113 58.4
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 1.7e-30 136.7 116 57.8
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 3.8e-30 135.6 152 51.3
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 8.4e-30 134.4 198 42.4
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.4e-29 133.7 130 53.8
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 1.4e-29 133.7 128 55.5
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 1.9e-29 133.3 152 49.3
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 3.2e-29 132.5 117 56.4
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 4.1e-29 132.1 159 44.7
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 5.4e-29 131.7 167 47.9
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 7.1e-29 131.3 158 48.7
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 7.1e-29 131.3 152 50.0
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 7.1e-29 131.3 127 54.3
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 7.1e-29 131.3 114 54.4
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 7.1e-29 131.3 167 44.3
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 2.1e-28 129.8 117 55.6
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 2.1e-28 129.8 134 50.7
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 1.3e-27 127.1 142 48.6
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 1.7e-27 126.7 114 54.4
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 2.3e-27 126.3 120 56.7
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 3.9e-27 125.6 152 44.7
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 8.7e-27 124.4 135 50.4
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 8.7e-27 124.4 138 50.0
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 8.7e-27 124.4 122 52.5
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 1.5e-26 123.6 138 50.7
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.9e-26 123.2 127 52.0
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 3.3e-26 122.5 167 43.7
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 9.6e-26 120.9 153 47.1
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 9.6e-26 120.9 145 47.6
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 1.2e-25 120.6 148 49.3
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 4.7e-25 118.6 153 46.4
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 4.7e-25 118.6 153 46.4
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 4.7e-25 118.6 188 39.9
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 1.8e-24 116.7 182 41.2
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 2.4e-24 116.3 133 47.4
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 9.0e-24 114.4 170 47.1
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 9.0e-24 114.4 157 45.2
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 9.0e-24 114.4 117 48.7
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 2.0e-23 113.2 121 51.2
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 2.9e-22 109.4 114 51.8
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 1.4e-21 107.1 83 63.9
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 1.6e-20 103.6 83 62.7
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 2.1e-17 93.2 76 59.2
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 9.9e-15 84.3 106 44.3
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 3.8e-14 82.4 98 49.0
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 3.8e-14 82.4 67 59.7
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 6.4e-14 81.6 75 56.0
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 6.4e-14 81.6 116 39.7
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 1.1e-13 80.9 98 45.9
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 1.1e-13 80.9 98 45.9
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 4.2e-13 79.0 105 35.2
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 7.1e-13 78.2 56 64.3
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 2.1e-12 76.6 97 44.3
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 2.1e-12 76.6 119 32.8
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 6.0e-12 75.1 63 61.9
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 3.9e-11 72.4 153 33.3
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 3.3e-10 69.3 74 52.7
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 9.6e-10 67.8 83 45.8
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 9.6e-10 67.8 71 50.7
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 2.1e-09 66.6 75 46.7
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 2.1e-09 66.6 75 46.7
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 2.8e-09 66.2 88 42.0
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 8.1e-09 64.7 62 53.2
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 2.4e-08 63.2 51 64.7
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 1.5e-07 60.5 111 29.7
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.0e-07 60.1 61 49.2
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 2.0e-07 60.1 61 49.2
EL10Ac1g02037 Beta vulgaris HOM05D010653 ORTHO05D013151 2.2e-06 56.6 51 52.9


User provided reference genes

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