Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 2.6e-155 552.0 271 100.0
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 9.0e-108 394.0 236 80.1
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 2.0e-107 392.9 236 79.7
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.9e-106 389.0 236 79.2
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 1.1e-105 387.1 236 77.1
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.4e-105 386.7 240 76.7
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 3.5e-104 382.1 236 75.8
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 1.0e-103 380.6 236 75.8
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 1.0e-103 380.6 236 77.5
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.9e-103 378.6 236 75.4
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 5.1e-103 378.3 236 76.7
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 8.7e-103 377.5 237 75.9
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.5e-102 376.7 236 76.7
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 2.5e-102 375.9 236 76.7
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 4.3e-102 375.2 234 76.5
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 5.7e-102 374.8 237 75.9
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 9.7e-102 374.0 236 75.4
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 9.7e-102 374.0 236 74.6
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 9.7e-102 374.0 238 74.4
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 1.6e-101 373.2 236 73.3
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 2.2e-101 372.9 236 73.7
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.8e-101 372.5 232 73.3
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 2.8e-101 372.5 236 74.6
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 3.7e-101 372.1 237 74.7
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 4.8e-101 371.7 236 74.2
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 4.8e-101 371.7 238 74.8
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 6.3e-101 371.3 234 74.8
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 1.8e-100 369.8 235 74.5
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 1.8e-100 369.8 235 74.5
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 1.8e-100 369.8 237 74.3
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 3.1e-100 369.0 235 76.6
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 4.1e-100 368.6 236 74.6
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 4.1e-100 368.6 236 75.0
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 5.3e-100 368.2 236 75.0
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 6.9e-100 367.9 236 74.6
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 9.0e-100 367.5 237 74.3
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 9.0e-100 367.5 236 74.6
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 2.0e-99 366.3 236 75.4
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 2.0e-99 366.3 236 75.0
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 2.0e-99 366.3 236 75.0
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 2.0e-99 366.3 238 73.1
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 5.9e-99 364.8 236 73.3
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 7.6e-99 364.4 236 74.6
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 7.6e-99 364.4 236 73.7
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.3e-98 363.6 236 71.6
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.3e-98 363.6 236 72.0
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 1.7e-98 363.2 236 74.6
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 2.9e-98 362.5 236 73.3
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 3.8e-98 362.1 236 73.7
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 3.8e-98 362.1 236 72.5
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 5.0e-98 361.7 236 73.3
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 6.5e-98 361.3 236 72.9
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.4e-97 360.1 236 72.9
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.4e-97 360.1 237 73.0
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.4e-97 360.1 237 73.0
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.4e-97 360.1 245 69.4
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.9e-97 359.8 236 72.9
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 7.2e-97 357.8 237 73.0
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 7.2e-97 357.8 237 73.0
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 9.3e-97 357.5 234 74.8
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 1.6e-96 356.7 277 65.7
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 2.1e-96 356.3 234 71.8
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 3.6e-96 355.5 236 74.6
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 4.6e-96 355.1 236 72.0
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 4.6e-96 355.1 242 71.5
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.0e-95 354.0 236 72.0
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.0e-95 354.0 236 72.0
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.0e-95 354.0 236 72.0
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 1.0e-95 354.0 231 72.3
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.8e-95 353.2 236 71.6
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 5.1e-95 351.7 245 68.2
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 8.8e-95 350.9 235 71.5
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.1e-94 350.5 234 71.8
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 4.3e-94 348.6 236 71.2
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.7e-93 345.5 240 67.9
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.7e-93 345.5 240 67.9
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 6.3e-93 344.7 277 63.2
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 1.4e-92 343.6 233 68.7
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 2.0e-91 339.7 216 72.7
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 4.5e-91 338.6 234 69.7
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.1e-89 334.0 234 65.4
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 1.4e-89 333.6 194 78.9
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 7.2e-89 331.3 236 68.2
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 9.4e-89 330.9 213 72.3
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.7e-88 329.3 272 60.3
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.0e-87 327.4 194 79.4
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 5.1e-87 325.1 262 60.7
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 5.1e-87 325.1 234 67.9
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 9.7e-86 320.9 348 49.4
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 5.3e-84 315.1 335 49.9
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 5.9e-83 311.6 238 63.0
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 1.7e-82 310.1 310 51.9
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 9.4e-81 304.3 277 56.0
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 6.7e-79 298.1 237 62.4
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 6.7e-79 298.1 186 74.7
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 3.7e-77 292.4 244 61.1
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.8e-77 292.0 238 61.8
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 6.3e-77 291.6 238 62.6
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 7.2e-73 278.1 216 61.1
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 2.0e-70 270.0 233 57.9
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.4e-68 263.8 234 56.4
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 5.5e-65 251.9 156 76.3
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 4.7e-64 248.8 163 73.0
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 9.8e-62 241.1 182 65.9
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.8e-60 236.9 282 49.6
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 9.1e-60 234.6 142 73.2
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 1.2e-59 234.2 212 51.9
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 3.5e-59 232.6 218 53.2
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 1.7e-58 230.3 144 74.3
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.5e-57 227.3 142 76.1
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 5.4e-52 208.8 217 47.9
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 1.7e-50 203.8 209 46.9
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 3.7e-45 186.0 151 58.3
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.2e-35 154.5 148 53.4
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 6.0e-35 152.1 98 70.4
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.7e-29 132.9 89 69.7
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 3.2e-28 129.8 89 67.4
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 4.4e-22 109.4 61 75.4
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 2.2e-21 107.1 70 75.7
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 2.2e-21 107.1 70 75.7
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 3.5e-19 99.8 51 84.3
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 4.6e-19 99.4 57 75.4
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 4.6e-19 99.4 53 75.5
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.4e-12 77.0 38 78.9
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.2e-12 76.3 77 50.6
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 2.7e-11 73.6 36 77.8
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.5e-11 73.2 66 54.5
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.5e-09 67.0 49 67.3
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 5.6e-09 65.9 62 53.2
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 7.3e-09 65.5 49 65.3
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.6e-08 64.3 65 53.8
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.8e-08 63.5 53 60.4
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 4.8e-08 62.8 49 63.3
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 6.2e-08 62.4 49 61.2
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 8.1e-08 62.0 50 62.0
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 8.1e-08 62.0 50 62.0
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 3.1e-07 60.1 33 63.6
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 3.1e-07 60.1 33 63.6
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 5.8e-06 55.8 38 65.8


User provided reference genes

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