Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.5e-146 523.1 317 100.0
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 2.2e-73 280.0 302 56.0
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.1e-67 261.2 296 54.1
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.1e-67 261.2 300 52.3
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 5.3e-67 258.8 299 52.8
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.4e-66 256.1 304 51.3
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 3.4e-66 256.1 299 53.2
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 4.5e-66 255.8 312 51.6
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 7.6e-66 255.0 300 52.0
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.0e-65 254.6 321 50.5
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.9e-65 253.1 301 51.5
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 5.0e-65 252.3 305 51.5
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.2e-64 249.6 296 49.7
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 6.1e-63 245.4 305 50.8
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.3e-62 244.2 302 49.3
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.9e-61 240.4 291 51.2
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.5e-61 240.0 297 49.5
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 5.7e-61 238.8 302 51.3
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 5.7e-61 238.8 298 51.7
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 7.4e-61 238.4 302 49.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 7.4e-61 238.4 302 48.7
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 9.7e-61 238.0 303 48.2
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.8e-60 236.5 302 49.3
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 3.7e-60 236.1 303 48.2
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.8e-60 235.7 304 47.4
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 4.8e-60 235.7 294 50.0
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 6.3e-60 235.3 292 50.3
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.1e-59 234.6 303 46.2
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.4e-59 234.2 303 49.8
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 9.1e-59 231.5 314 47.1
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.2e-58 231.1 308 50.0
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 4.5e-58 229.2 318 48.7
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 5.9e-58 228.8 301 46.5
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 6.5e-57 225.3 303 48.8
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.9e-56 223.8 302 48.3
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.9e-56 223.8 299 48.8
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 2.5e-56 223.4 296 48.3
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 3.2e-56 223.0 312 45.2
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 4.2e-56 222.6 302 46.4
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 4.2e-56 222.6 308 47.4
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 5.5e-56 222.2 271 50.2
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 5.5e-56 222.2 300 48.0
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 5.5e-56 222.2 322 46.6
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 3.6e-55 219.5 294 48.3
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.0e-54 216.5 296 44.9
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 2.0e-53 213.8 292 45.5
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.6e-53 213.4 319 44.2
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 5.7e-53 212.2 295 47.1
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.3e-52 211.1 304 43.8
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 1.7e-52 210.7 302 43.7
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.2e-52 208.4 303 43.6
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.1e-51 208.0 302 43.0
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 1.1e-51 208.0 222 53.2
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.8e-51 207.2 292 47.3
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 4.1e-51 206.1 301 44.9
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 9.1e-51 204.9 340 42.6
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.2e-50 204.5 299 44.5
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 1.5e-50 204.1 302 45.7
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.0e-50 203.8 310 45.5
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 5.9e-50 202.2 293 45.4
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 7.7e-50 201.8 300 42.0
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 1.0e-49 201.4 299 44.8
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.0e-49 201.4 306 44.1
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.0e-49 201.4 302 45.4
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.7e-49 200.7 300 43.7
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 2.2e-49 200.3 288 47.2
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 2.9e-49 199.9 290 43.1
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 8.5e-49 198.4 305 44.3
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.1e-48 198.0 288 45.8
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.4e-48 197.6 303 43.6
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 3.2e-48 196.4 228 52.2
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 3.2e-48 196.4 301 42.9
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 4.2e-48 196.1 305 44.3
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.6e-47 194.1 297 45.5
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.6e-47 194.1 300 43.7
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.1e-47 193.7 300 40.7
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.1e-47 193.7 304 42.1
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.9e-47 191.8 300 44.3
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 1.0e-46 191.4 290 46.9
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 3.0e-46 189.9 302 43.7
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 5.2e-46 189.1 292 44.2
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 6.7e-46 188.7 299 41.5
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.1e-45 188.0 303 43.2
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 7.4e-45 185.3 302 40.1
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.4e-45 185.3 302 41.4
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 9.7e-45 184.9 304 43.8
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.7e-44 184.1 298 40.9
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.7e-44 184.1 300 42.0
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.2e-44 183.7 298 40.6
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 2.2e-44 183.7 291 43.3
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 3.7e-44 183.0 301 42.2
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 6.3e-44 182.2 300 43.3
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 8.2e-44 181.8 304 40.8
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.1e-43 181.4 299 42.8
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 3.1e-43 179.9 300 42.3
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.6e-42 177.6 229 48.0
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 2.9e-41 173.3 310 40.6
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.5e-40 171.0 297 40.4
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 7.2e-40 168.7 229 47.2
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.2e-39 167.9 300 37.7
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.2e-39 167.9 290 41.7
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 4.7e-39 166.0 464 32.5
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.1e-39 165.6 310 39.7
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 5.2e-38 162.5 293 38.2
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 6.7e-38 162.2 290 37.2
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-37 161.4 292 39.0
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 2.6e-37 160.2 302 41.1
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 4.4e-37 159.5 288 37.5
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 5.7e-37 159.1 297 41.4
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 9.7e-37 158.3 300 39.3
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 2.8e-36 156.8 283 39.2
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 6.3e-36 155.6 394 34.0
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.8e-35 154.1 309 35.3
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.4e-35 153.7 222 43.7
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 4.1e-35 152.9 292 38.0
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 7.0e-35 152.1 288 37.2
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.9e-33 146.7 299 34.4
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.1e-32 144.8 191 44.0
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.2e-31 141.4 155 52.3
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.4e-30 137.9 308 36.0
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 2.3e-30 137.1 318 33.3
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 5.2e-30 136.0 292 34.9
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.4e-29 132.9 295 36.3
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 1.3e-28 131.3 302 33.4
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.3e-28 131.3 301 33.9
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 4.1e-27 126.3 295 35.3
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 2.0e-26 124.0 303 33.0
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 3.8e-25 119.8 192 37.5
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 5.0e-25 119.4 191 41.9
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.7e-20 103.2 90 58.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 6.3e-20 102.4 266 35.7
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 6.3e-20 102.4 195 35.4
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.0e-18 97.4 290 30.0
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 2.5e-16 90.5 347 25.9
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 6.8e-14 82.4 85 52.9
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 8.9e-14 82.0 87 49.4
Ah.07g198490 Amaranthus hybridus HOM05D042025 ORTHO05D006058 4.4e-13 79.7 86 51.2
Ah.07g198550 Amaranthus hybridus HOM05D042025 ORTHO05D006058 1.7e-12 77.8 86 50.0
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 5.9e-10 69.3 117 39.3
Ah.07g198540 Amaranthus hybridus HOM05D042025 ORTHO05D006058 3.0e-09 67.0 66 53.0
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 5.0e-09 66.2 86 44.2
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 3.3e-08 63.5 88 43.2
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 1.6e-07 61.2 37 86.5
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.1e-07 60.8 51 68.6
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.8e-07 60.5 51 68.6
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 3.6e-07 60.1 113 35.4
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.1e-06 58.5 46 69.6
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 1.4e-06 58.2 110 35.5


User provided reference genes

Program Settings