Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0003840 Simmondsia chinensis HOM05D007960 ORTHO05D010026 3.4e-62 241.5 124 100.0
Sc04g0003850 Simmondsia chinensis HOM05D007960 ORTHO05D010026 1.2e-59 233.0 124 96.8
Sc04g0003950 Simmondsia chinensis HOM05D007960 ORTHO05D010026 1.8e-58 229.2 122 97.5
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 1.1e-12 77.0 98 46.9
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 5.5e-12 74.7 97 45.4
Ah.11g047280 Amaranthus hybridus HOM05D007960 ORTHO05D010026 2.7e-11 72.4 120 44.2
PGSC0003DMG400041876 Solanum tuberosum HOM05D007960 ORTHO05D010026 4.0e-10 68.6 71 54.9
Phvul.003G179700 Phaseolus vulgaris HOM05D007960 ORTHO05D010026 5.2e-10 68.2 110 41.8
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 6.8e-10 67.8 107 45.8
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 8.8e-10 67.4 107 46.7
Lj1g0016835 Lotus japonicus HOM05D007960 ORTHO05D010026 8.8e-10 67.4 94 46.8
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 8.8e-10 67.4 113 43.4
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 1.2e-09 67.0 110 42.7
Sopen03g033530 Solanum pennellii HOM05D007960 ORTHO05D010026 1.2e-09 67.0 97 46.4
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 2.6e-09 65.9 114 41.2
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 2.6e-09 65.9 99 44.4
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 9.8e-09 63.9 121 38.0
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 2.2e-08 62.8 117 43.6
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 2.8e-08 62.4 118 42.4
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 3.7e-08 62.0 119 41.2
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 3.7e-08 62.0 86 50.0
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 4.9e-08 61.6 108 42.6
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 6.3e-08 61.2 110 39.1
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 6.3e-08 61.2 110 39.1
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 8.3e-08 60.8 112 43.8
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 1.1e-07 60.5 131 43.5
EL10Ac5g11226 Beta vulgaris HOM05D007960 ORTHO05D010026 1.4e-07 60.1 129 38.0
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 3.1e-07 58.9 120 43.3
AUR62036925 Chenopodium quinoa HOM05D007960 ORTHO05D010026 3.1e-07 58.9 69 55.1
Glyma.17G123900 Glycine max HOM05D007960 ORTHO05D010026 4.1e-07 58.5 111 37.8
VMungo1215G0525 Vigna mungo HOM05D007960 ORTHO05D010026 4.1e-07 58.5 107 40.2
AT1G74055 Arabidopsis thaliana HOM05D007960 ORTHO05D010026 9.2e-07 57.4 123 41.5
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 1.2e-06 57.0 133 41.4
THA.LOC104812118 Tarenaya hassleriana HOM05D007960 ORTHO05D010026 1.2e-06 57.0 126 41.3
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 1.6e-06 56.6 142 38.7
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 1.6e-06 56.6 137 38.0
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 1.6e-06 56.6 137 38.0
Lalb_Chr12g0197501 Lupinus albus HOM05D007960 ORTHO05D010026 1.6e-06 56.6 61 50.8
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 3.5e-06 55.5 124 41.9
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 4.5e-06 55.1 104 38.5
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 5.9e-06 54.7 139 38.8
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 5.9e-06 54.7 139 38.8
Dinv38606 Davidia involucrata HOM05D000227 ORTHO05D001491 5.9e-06 54.7 83 48.2
Lalb_Chr13g0302531 Lupinus albus HOM05D007960 ORTHO05D010026 5.9e-06 54.7 77 46.8


User provided reference genes

Program Settings