Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0003580 Simmondsia chinensis HOM05D007952 ORTHO05D009823 8.6e-72 273.5 131 100.0
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 8.9e-53 210.3 150 72.7
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 2.4e-42 175.6 109 81.7
Lsat_1_v5_gn_4_99801 Lactuca sativa HOM05D007952 ORTHO05D009823 1.6e-41 172.9 94 89.4
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 1.6e-41 172.9 94 89.4
PGSC0003DMG400035391 Solanum tuberosum HOM05D007952 ORTHO05D009823 1.6e-41 172.9 94 89.4
Oeu020621.1 Olea europaea HOM05D007952 ORTHO05D009823 1.1e-39 166.8 94 85.1
Sc01g0006530 Simmondsia chinensis HOM05D007952 ORTHO05D009823 1.1e-39 166.8 94 86.2
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-39 166.4 94 86.2
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 3.3e-39 165.2 168 57.1
Nn5g29057 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.3e-39 165.2 94 87.2
Medtr0002s0270 Medicago truncatula HOM05D007952 ORTHO05D009823 7.3e-39 164.1 94 85.1
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 1.8e-37 159.5 112 74.1
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.0e-37 157.1 118 70.3
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.0e-37 157.1 118 70.3
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.0e-37 157.1 118 70.3
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.0e-37 157.1 118 70.3
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 3.4e-36 155.2 108 75.0
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 7.6e-36 154.1 94 84.0
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 1.4e-34 149.8 88 83.0
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.3e-32 143.3 78 87.2
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 5.1e-32 141.4 81 82.7
arahy.Tifrunner.gnm1.ann1.GIFH8E Arachis hypogaea HOM05D007952 ORTHO05D009823 1.1e-31 140.2 78 85.9
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 1.1e-31 140.2 144 55.6
BolSC44t60812H Brassica oleracea HOM05D007952 ORTHO05D009823 1.4e-29 133.3 74 85.1
MBI08_g48227_MAGBIO Magnolia biondii HOM05D007952 ORTHO05D009823 3.1e-29 132.1 75 86.7
Peaxi162Scf00987g00215 Petunia axillaris HOM05D007952 ORTHO05D009823 3.1e-29 132.1 75 86.7
unitig_87.g27919 Utricularia gibba HOM05D007952 ORTHO05D009823 3.1e-29 132.1 75 86.7
unitig_87.g28035 Utricularia gibba HOM05D007952 ORTHO05D009823 3.1e-29 132.1 75 86.7
unitig_91.g26519 Utricularia gibba HOM05D007952 ORTHO05D009823 3.1e-29 132.1 75 86.7
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 4.0e-29 131.7 97 70.1
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 4.0e-29 131.7 97 70.1
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 4.0e-29 131.7 100 69.0
Medtr3g035635 Medicago truncatula HOM05D007952 ORTHO05D009823 1.2e-28 130.2 82 79.3
arahy.Tifrunner.gnm1.ann1.J5KLX8 Arachis hypogaea HOM05D007952 ORTHO05D009823 5.8e-28 127.9 111 63.1
EL10As10g23962 Beta vulgaris HOM05D007952 ORTHO05D009823 7.6e-28 127.5 75 85.3
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 9.9e-28 127.1 97 68.0
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 9.9e-28 127.1 67 91.0
arahy.Tifrunner.gnm1.ann1.PHD7EH Arachis hypogaea HOM05D007952 ORTHO05D009823 1.1e-26 123.6 78 76.9
Lj2C1239G84 Lonicera japonica HOM05D007952 ORTHO05D009823 1.4e-26 123.2 67 89.6
Atru.chr9.365 Acer truncatum HOM05D007952 ORTHO05D009823 4.2e-26 121.7 68 86.8
Sc23g0003910 Simmondsia chinensis HOM05D007952 ORTHO05D009823 4.2e-26 121.7 88 73.9
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 2.7e-25 119.0 149 51.7
Sc21g0004590 Simmondsia chinensis HOM05D007952 ORTHO05D009823 3.7e-22 108.6 95 60.0
SEGI_38349 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.1e-21 107.1 67 79.1
Psat0ss8367g0160 Pisum sativum HOM05D001387 ORTHO05D001250 5.3e-21 104.8 64 75.0
Nitab4.5_0004552g0010 Nicotiana tabacum HOM05D000796 ORTHO05D009823 6.9e-21 104.4 83 67.5
Oeu022560.1 Olea europaea HOM05D007952 ORTHO05D009823 9.0e-21 104.0 75 69.3
SEGI_08440 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 9.0e-21 104.0 67 77.6
SEGI_09919 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 9.0e-21 104.0 67 77.6
SEGI_21867 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 9.0e-21 104.0 67 77.6
ECA232G1868 Erigeron canadensis HOM05D000002 ORTHO05D002065 2.0e-20 102.8 57 84.2
Hma1.2p1_0594F.1_g185798 Hydrangea macrophylla HOM05D007952 ORTHO05D009823 4.5e-20 101.7 56 87.5
Nn6g32821 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.0e-19 100.5 55 87.3
Nn6g32826 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.0e-19 100.5 55 87.3
DCAR_004958 Daucus carota HOM05D007952 ORTHO05D009823 1.1e-18 97.1 52 86.5
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 1.4e-18 96.7 66 71.2
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 2.5e-18 95.9 61 75.4
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 1.2e-17 93.6 65 69.2
Nn6g33130 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.5e-17 92.0 50 88.0
Potri.005G037850 Populus trichocarpa HOM05D007952 ORTHO05D009823 3.5e-17 92.0 57 78.9
BcaC04g20704 Brassica carinata HOM05D007952 ORTHO05D009823 4.6e-17 91.7 69 71.0
CAN.G1186.47 Capsicum annuum HOM05D007952 ORTHO05D009823 3.3e-15 85.5 56 71.4
Nitab4.5_0007400g0010 Nicotiana tabacum HOM05D007952 ORTHO05D009823 1.3e-14 83.6 69 62.3
CBR_g12953 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-14 82.0 55 72.7
Peaxi162Scf00002g00723 Petunia axillaris HOM05D007952 ORTHO05D009823 4.8e-14 81.6 54 66.7
Oeu012768.1 Olea europaea HOM05D007952 ORTHO05D009823 1.4e-13 80.1 55 72.7
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 3.1e-13 79.0 65 66.2
Nitab4.5_0007025g0020 Nicotiana tabacum HOM05D001226 ORTHO05D009823 2.2e-11 72.8 62 58.1
Oeu000007.1 Olea europaea HOM05D007952 ORTHO05D009823 5.0e-11 71.6 63 57.1
SEGI_20804 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.4e-10 70.1 44 75.0
SEGI_02200 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.6e-09 66.6 53 64.2
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 1.6e-09 66.6 70 54.3
BolSC91t61267H Brassica oleracea HOM05D007952 ORTHO05D009823 6.1e-09 64.7 50 74.0
SEGI_35056 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 3.3e-07 58.9 32 81.2
Sc02g0004570 Simmondsia chinensis HOM05D008037 ORTHO05D004271 3.3e-07 58.9 36 75.0
EL10As10g23963 Beta vulgaris HOM05D008037 ORTHO05D004271 4.3e-07 58.5 30 86.7
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 5.7e-07 58.2 36 75.0
Solyc09g011150.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 7.4e-07 57.8 37 73.0
Hund25912 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund27633 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund27757 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund27833 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28332 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28440 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28446 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28538 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28585 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28614 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28944 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28949 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28956 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28959 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund28981 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29028 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29091 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29107 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29181 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29184 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29242 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29249 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29256 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29263 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29271 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29275 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29279 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29283 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29290 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29318 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29436 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29451 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29497 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29785 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29853 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund29912 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund30002 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund30004 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund30064 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund30203 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund30263 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund30448 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund30632 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Hund30993 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.3e-06 57.0 30 83.3
Actinidia30703 Actinidia chinensis HOM05D001966 ORTHO05D009823 1.6e-06 56.6 65 52.3
EL10Ac5g11360 Beta vulgaris HOM05D008037 ORTHO05D004271 2.8e-06 55.8 30 80.0
BolC6t36075H Brassica oleracea HOM05D000963 ORTHO05D009823 4.8e-06 55.1 29 79.3
Nitab4.5_0027992g0040 Nicotiana tabacum HOM05D008037 ORTHO05D004271 6.3e-06 54.7 38 68.4
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 8.2e-06 54.3 37 67.6
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 8.2e-06 54.3 32 78.1


User provided reference genes

Program Settings