Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 0.0e+00 1077.4 568 100.0
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 3.9e-238 828.2 569 75.7
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.2e-234 816.6 569 72.8
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 1.5e-234 816.2 569 71.4
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.3e-225 786.6 569 71.0
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.9e-224 782.7 568 70.1
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 3.2e-224 781.9 570 70.2
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.6e-223 779.6 570 69.6
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 4.7e-223 778.1 570 71.9
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 7.9e-223 777.3 570 69.5
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 3.9e-222 775.0 570 68.8
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 1.3e-220 770.0 500 75.2
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 4.8e-220 768.1 577 69.0
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.8e-219 766.1 573 70.2
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.0e-218 762.7 575 69.6
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 3.4e-218 761.9 570 67.4
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 3.4e-218 761.9 562 68.3
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.0e-217 760.4 571 66.9
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 1.3e-217 760.0 574 68.5
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.3e-217 760.0 570 67.5
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.9e-217 758.8 499 75.2
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 2.9e-217 758.8 571 68.0
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 8.5e-217 757.3 573 72.4
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 3.2e-216 755.4 571 67.8
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 3.2e-216 755.4 574 67.9
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 4.2e-216 755.0 574 69.3
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 5.5e-216 754.6 570 68.4
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 7.2e-216 754.2 551 69.3
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.7e-215 752.3 570 67.2
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 8.0e-215 750.7 554 70.6
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 8.0e-215 750.7 570 67.7
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.0e-214 750.4 574 67.2
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 1.4e-214 750.0 571 68.5
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 1.4e-214 750.0 570 67.2
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.8e-214 749.6 572 66.6
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.3e-214 749.2 570 68.1
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 3.0e-214 748.8 553 68.2
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.9e-214 748.4 567 66.8
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 8.8e-214 747.3 569 68.2
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 8.8e-214 747.3 502 73.9
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 3.3e-213 745.3 501 73.9
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 4.4e-213 745.0 572 66.8
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 1.3e-212 743.4 570 68.1
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.3e-212 743.4 570 70.4
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.3e-212 743.4 570 67.7
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.3e-212 743.4 502 73.7
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 2.2e-212 742.7 573 69.6
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 1.1e-211 740.3 572 67.8
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 1.1e-211 740.3 501 72.9
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 7.0e-211 737.6 569 69.2
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 1.2e-210 736.9 570 71.1
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.6e-210 736.5 572 69.6
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 2.6e-210 735.7 568 66.4
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.6e-210 735.7 572 69.4
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.6e-210 735.7 501 73.1
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.5e-210 735.3 500 73.2
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 5.9e-210 734.6 570 66.3
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.0e-209 733.8 571 66.4
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.7e-209 733.0 558 66.8
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.2e-209 732.6 500 73.4
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 6.5e-209 731.1 502 71.5
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 6.5e-209 731.1 573 66.3
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 1.1e-208 730.3 570 68.6
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 1.9e-208 729.6 501 72.7
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 1.9e-208 729.6 501 72.7
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.2e-208 728.8 573 68.9
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 3.2e-208 728.8 570 66.3
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 4.2e-208 728.4 571 65.3
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 9.4e-208 727.2 568 64.3
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 9.4e-208 727.2 573 68.8
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.2e-207 726.9 573 68.9
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.6e-207 726.5 568 67.1
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.7e-207 725.7 500 72.8
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.4e-206 723.4 573 65.6
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 4.0e-206 721.8 569 68.7
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 6.7e-206 721.1 572 65.0
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.2e-205 720.3 576 66.0
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.0e-205 719.5 571 67.1
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 5.7e-205 718.0 569 67.0
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.7e-204 716.5 571 63.9
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.7e-204 716.5 570 66.7
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 2.2e-204 716.1 570 65.3
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.1e-203 713.8 558 67.7
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.8e-203 713.0 501 70.1
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 5.3e-203 711.4 558 67.9
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 7.0e-203 711.1 570 64.4
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.7e-201 706.4 568 67.4
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 6.5e-201 704.5 558 67.2
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 1.1e-200 703.7 584 66.3
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 2.7e-199 699.1 502 69.7
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 2.2e-196 689.5 569 62.6
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 8.3e-196 687.6 570 64.7
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.8e-195 686.4 573 66.7
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 2.5e-192 676.0 568 62.3
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 1.0e-190 670.6 505 67.5
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 1.0e-190 670.6 509 67.4
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.8e-190 669.8 574 63.8
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.8e-190 669.8 576 63.0
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 1.8e-190 669.8 569 62.0
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 2.6e-189 666.0 429 76.2
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 3.4e-189 665.6 568 61.8
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 5.7e-189 664.8 500 66.0
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.3e-188 663.7 584 62.3
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 8.3e-188 661.0 584 62.5
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 8.3e-188 661.0 500 67.2
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 1.8e-187 659.8 571 62.0
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 3.5e-186 655.6 504 67.7
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 5.9e-186 654.8 571 61.3
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 6.6e-185 651.4 499 63.9
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 1.2e-183 647.1 572 60.3
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 5.6e-176 621.7 423 73.3
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 4.7e-175 618.6 575 61.0
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.6e-173 612.8 575 61.2
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 1.3e-169 600.5 505 60.6
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 1.5e-168 597.0 501 59.5
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 4.0e-166 589.0 350 80.0
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 2.5e-160 569.7 433 64.0
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 2.5e-160 569.7 503 58.1
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 6.2e-159 565.1 383 70.5
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 4.0e-158 562.4 499 60.9
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 8.4e-140 501.5 455 55.4
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 4.6e-138 495.7 503 50.3
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.9e-132 475.7 478 58.2
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 6.2e-127 458.8 502 48.0
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 6.5e-124 448.7 562 48.9
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 2.3e-121 440.3 258 79.5
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 4.3e-120 436.0 518 44.2
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 5.9e-117 425.6 500 49.6
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 4.1e-110 402.9 448 52.7
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 1.6e-106 391.0 444 45.3
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 2.7e-106 390.2 500 45.8
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 3.7e-95 353.2 319 59.6
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 8.0e-90 335.5 469 40.7
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 2.0e-88 330.9 299 53.8
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 3.1e-78 297.0 379 47.2
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 4.1e-70 270.0 463 37.1
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 2.5e-67 260.8 324 41.4
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 6.8e-65 252.7 235 57.9
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 7.3e-59 232.6 570 32.5
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 9.9e-40 169.1 231 45.9
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 3.9e-36 157.1 542 24.9
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 6.4e-31 139.8 172 48.8
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.4e-17 95.5 92 60.9
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 5.7e-11 73.6 82 53.7
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.4e-06 58.9 53 58.5


User provided reference genes

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