Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2535.8 1284 100.0
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2281.5 1262 90.5
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2279.6 1262 90.5
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2277.7 1262 90.3
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2270.4 1264 89.5
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2268.8 1261 89.8
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2266.5 1263 90.3
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2265.7 1263 89.8
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2265.7 1259 89.4
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2265.0 1262 89.3
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2264.6 1262 89.1
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2264.6 1262 89.5
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2263.0 1264 89.2
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2262.3 1263 90.1
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2262.3 1260 89.8
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2260.7 1261 88.8
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2260.0 1262 89.5
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2260.0 1262 89.1
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2260.0 1261 88.9
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2259.6 1264 89.6
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2259.2 1262 89.1
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2257.3 1261 90.2
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2256.5 1277 88.7
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2255.3 1261 89.5
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2253.0 1262 88.7
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2252.6 1262 88.3
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2251.9 1261 88.3
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2250.7 1262 88.9
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2248.4 1262 89.1
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2248.0 1263 89.8
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2247.6 1261 88.3
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2244.9 1265 88.9
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2243.0 1261 88.3
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2242.6 1268 89.1
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2241.8 1263 89.1
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2240.7 1263 88.6
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2240.7 1261 88.3
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2240.3 1263 89.2
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2239.2 1268 89.0
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2238.4 1264 89.2
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2238.4 1262 89.2
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2238.0 1261 88.2
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2237.6 1261 88.2
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2236.8 1261 88.5
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2236.5 1261 88.1
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2234.9 1261 88.3
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2233.8 1262 88.5
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2232.6 1264 88.1
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2232.2 1236 90.5
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2231.1 1262 88.7
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2230.7 1264 88.0
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2228.8 1261 87.5
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2228.4 1261 87.9
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2227.2 1273 86.7
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2227.2 1278 87.5
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2226.4 1267 87.8
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2224.9 1261 87.3
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2224.5 1263 88.4
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2221.0 1261 87.2
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2220.3 1261 87.2
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2220.3 1261 87.2
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2220.3 1263 87.6
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2217.6 1261 87.6
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2214.5 1262 87.6
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2200.6 1266 86.2
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2197.5 1262 86.8
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2196.8 1263 86.5
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2196.4 1263 86.8
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2196.4 1262 86.7
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2196.0 1258 86.8
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2195.6 1263 86.9
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2192.5 1209 89.4
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2191.0 1261 87.0
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2190.2 1264 86.2
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2188.7 1272 86.2
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2187.1 1263 86.1
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2186.8 1261 87.3
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2174.4 1262 86.3
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2173.3 1261 86.0
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2172.9 1327 82.2
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2168.3 1263 85.8
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2166.3 1227 87.1
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2166.0 1263 85.7
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2165.2 1263 85.7
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2164.4 1263 85.6
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2164.4 1262 85.3
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2163.7 1262 85.3
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2162.5 1263 85.6
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2162.5 1261 85.8
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2147.5 1262 85.0
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2147.1 1262 85.0
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2145.5 1262 84.9
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2144.4 1261 84.9
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2144.4 1261 84.9
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2132.5 1265 84.7
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2116.7 1275 83.5
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2110.1 1265 83.6
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2109.7 1232 84.5
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2109.3 1268 83.8
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2098.9 1287 82.8
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2082.8 1261 83.2
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2051.6 1207 82.9
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 1973.4 1206 79.3
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 1968.7 1212 80.0
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1966.4 1122 87.0
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 1952.6 1222 78.0
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1944.9 1206 79.2
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1944.9 1206 79.2
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1944.5 1110 87.0
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 1933.3 1217 77.2
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1758.8 1255 74.0
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1696.8 1207 69.0
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1666.4 1213 68.5
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1656.7 1280 70.3
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1489.2 790 93.4
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1457.2 791 90.8
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1401.0 763 91.0
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1261.5 686 90.5
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1260.4 686 90.8
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1107.0 675 81.6
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 2.1e-303 1046.2 669 79.5
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.9e-296 1023.1 571 87.0
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 3.7e-292 1008.8 596 84.9
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 6.3e-260 901.7 1199 43.6
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.0e-257 894.4 592 76.9
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 6.1e-231 805.4 472 85.4
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 9.5e-224 781.6 472 82.8
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.3e-220 771.2 473 82.5
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 8.3e-212 741.9 473 80.3
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 2.7e-202 710.3 398 87.4
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 2.7e-141 507.7 1212 31.4
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.1e-130 471.5 1307 30.1
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.2e-78 297.7 1152 26.8
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 2.1e-66 258.8 147 85.7
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.2e-47 195.7 107 91.6
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.4e-38 166.4 174 53.4
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 4.2e-30 138.3 139 50.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.8e-20 106.3 61 85.2
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 2.2e-18 99.4 52 94.2


User provided reference genes

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