Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 1.1e-115 420.6 325 100.0
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 1.9e-43 180.6 302 66.9
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 5.5e-43 179.1 299 68.9
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 1.6e-39 167.5 285 61.8
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 2.1e-39 167.2 288 56.2
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 1.1e-38 164.9 288 57.6
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 1.4e-38 164.5 287 62.0
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 1.2e-37 161.4 285 73.0
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.5e-37 161.0 286 59.4
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 3.4e-37 159.8 285 56.8
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 2.2e-36 157.1 282 53.5
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 8.5e-36 155.2 300 55.3
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 1.9e-35 154.1 291 42.6
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 3.2e-35 153.3 291 57.4
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 3.2e-35 153.3 287 50.9
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 7.2e-35 152.1 287 56.1
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 9.3e-35 151.8 287 63.8
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 9.3e-35 151.8 285 60.0
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.2e-34 151.4 283 42.0
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 1.6e-34 151.0 285 55.1
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 3.6e-34 149.8 288 58.3
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 3.6e-34 149.8 285 57.5
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 4.6e-34 149.4 285 55.8
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 4.6e-34 149.4 283 47.0
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 6.1e-34 149.1 289 69.2
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 6.1e-34 149.1 285 63.5
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 6.1e-34 149.1 283 53.0
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 1.0e-33 148.3 286 58.7
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 1.0e-33 148.3 292 58.6
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.3e-33 147.9 285 64.2
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 1.3e-33 147.9 285 63.2
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 1.8e-33 147.5 285 62.5
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 2.3e-33 147.1 285 57.9
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 3.0e-33 146.7 286 70.3
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 3.9e-33 146.4 311 52.1
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 8.7e-33 145.2 287 57.8
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 1.1e-32 144.8 286 60.5
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 1.1e-32 144.8 282 59.2
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 2.5e-32 143.7 286 58.4
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 4.3e-32 142.9 287 54.4
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 5.7e-32 142.5 289 55.4
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 1.6e-31 141.0 286 59.1
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 2.8e-31 140.2 285 57.5
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 2.8e-31 140.2 282 55.0
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 6.3e-31 139.0 294 55.4
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 1.4e-30 137.9 286 60.5
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 2.4e-30 137.1 286 56.3
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 3.1e-30 136.7 282 55.3
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 4.1e-30 136.3 321 61.7
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 5.3e-30 136.0 282 46.8
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 9.1e-30 135.2 287 51.2
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 9.1e-30 135.2 285 58.6
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 1.5e-29 134.4 284 50.7
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 4.5e-29 132.9 285 48.4
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 4.5e-29 132.9 284 58.8
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 4.5e-29 132.9 284 58.8
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 4.5e-29 132.9 287 48.4
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 5.9e-29 132.5 294 63.3
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 1.0e-28 131.7 287 63.4
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 1.3e-28 131.3 288 57.6
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 1.7e-28 131.0 293 61.8
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 1.7e-28 131.0 283 48.4
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 2.2e-28 130.6 284 51.1
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 3.8e-28 129.8 285 41.1
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 8.5e-28 128.6 284 50.0
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 8.5e-28 128.6 282 48.2
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 2.5e-27 127.1 283 45.6
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 2.5e-27 127.1 283 45.6
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 7.2e-27 125.6 290 60.7
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 2.1e-26 124.0 284 55.6
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 6.1e-26 122.5 297 54.5
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 1.4e-25 121.3 282 49.3
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 1.4e-25 121.3 283 52.7
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 6.7e-25 119.0 282 48.9
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 6.7e-25 119.0 277 49.5
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 6.7e-25 119.0 289 58.5
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 8.8e-25 118.6 282 51.8
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 8.8e-25 118.6 299 63.2
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 1.5e-24 117.9 286 57.3
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 2.0e-24 117.5 297 57.6
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 7.4e-24 115.5 284 35.2
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 9.7e-24 115.2 288 50.7
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 1.3e-23 114.8 284 35.2
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 2.2e-23 114.0 283 48.1
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 2.8e-23 113.6 284 51.1
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 9.1e-22 108.6 292 52.7
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 9.1e-22 108.6 282 50.4
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 9.1e-22 108.6 282 50.4
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 9.1e-22 108.6 88 67.0
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 1.5e-21 107.8 281 50.2
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 1.0e-20 105.1 283 43.1
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 1.0e-20 105.1 297 54.9
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 1.3e-20 104.8 90 70.0
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 9.4e-19 98.6 310 37.7
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 3.6e-18 96.7 255 40.0
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.5e-16 91.3 90 61.1
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 7.4e-16 89.0 375 36.5
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 4.8e-15 86.3 281 49.5
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.8e-14 84.3 65 61.5
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 5.3e-14 82.8 79 65.8
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 5.9e-13 79.3 126 42.1
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 7.7e-13 79.0 84 58.3
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 1.3e-12 78.2 82 52.4
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 2.9e-12 77.0 77 63.6
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 3.8e-12 76.6 49 79.6
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 1.5e-08 64.7 74 51.4
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 1.3e-07 61.6 56 60.7
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 6.3e-07 59.3 66 51.5


User provided reference genes

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