Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 7.0e-102 374.0 196 100.0
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 6.0e-69 264.6 161 82.6
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 1.3e-68 263.5 161 84.5
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 3.9e-68 261.9 161 83.9
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 5.0e-68 261.5 145 90.3
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 5.0e-68 261.5 145 90.3
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 6.6e-68 261.2 159 84.3
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 1.5e-67 260.0 154 83.8
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 1.9e-67 259.6 159 81.1
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 3.3e-67 258.8 161 81.4
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 4.3e-67 258.5 161 83.9
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 5.6e-67 258.1 161 82.6
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 7.3e-67 257.7 145 87.6
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 7.3e-67 257.7 161 83.9
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 1.2e-66 256.9 161 82.6
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.2e-66 256.9 161 82.0
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 1.6e-66 256.5 161 82.6
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 2.1e-66 256.1 159 79.9
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 2.1e-66 256.1 161 82.0
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 4.7e-66 255.0 161 82.0
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 6.2e-66 254.6 161 79.5
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 1.1e-65 253.8 161 79.5
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 1.1e-65 253.8 161 81.4
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 2.3e-65 252.7 161 82.0
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 3.1e-65 252.3 145 86.9
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 4.0e-65 251.9 161 80.7
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 5.2e-65 251.5 161 78.9
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 5.2e-65 251.5 161 80.7
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 5.2e-65 251.5 161 80.7
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 6.8e-65 251.1 156 82.7
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 6.8e-65 251.1 161 78.9
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 6.8e-65 251.1 146 84.9
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 8.9e-65 250.8 161 80.7
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 1.2e-64 250.4 191 71.7
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.2e-64 250.4 161 80.1
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 1.5e-64 250.0 161 83.2
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 2.0e-64 249.6 161 79.5
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.0e-64 249.6 161 80.1
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 2.6e-64 249.2 161 78.9
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 2.6e-64 249.2 143 86.7
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 2.6e-64 249.2 156 80.1
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 3.4e-64 248.8 161 78.3
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 4.4e-64 248.4 155 80.6
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 5.8e-64 248.1 161 77.6
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 5.8e-64 248.1 181 71.3
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 9.9e-64 247.3 161 78.9
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 1.3e-63 246.9 161 80.1
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 1.7e-63 246.5 161 78.9
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 2.9e-63 245.7 161 80.7
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 2.9e-63 245.7 161 79.5
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 3.7e-63 245.4 161 78.9
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 3.7e-63 245.4 161 78.9
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 3.7e-63 245.4 143 84.6
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 4.9e-63 245.0 157 79.0
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 4.9e-63 245.0 161 78.9
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 6.4e-63 244.6 161 76.4
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 6.4e-63 244.6 161 79.5
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 8.3e-63 244.2 161 78.9
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 8.3e-63 244.2 161 78.9
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.1e-62 243.8 144 84.0
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.4e-62 243.4 161 79.5
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 1.9e-62 243.0 159 77.4
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 1.9e-62 243.0 161 75.8
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 2.4e-62 242.7 162 79.0
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 9.2e-62 240.7 161 78.3
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 9.2e-62 240.7 161 78.3
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 9.2e-62 240.7 161 78.3
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 1.2e-61 240.4 161 75.2
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 1.2e-61 240.4 161 77.6
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 1.6e-61 240.0 161 77.0
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 1.6e-61 240.0 161 77.0
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 1.6e-61 240.0 154 78.6
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 2.7e-61 239.2 146 80.8
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 2.7e-61 239.2 161 77.6
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 2.7e-61 239.2 161 76.4
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 2.7e-61 239.2 161 77.6
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 4.6e-61 238.4 160 75.6
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 4.6e-61 238.4 161 77.6
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 7.8e-61 237.7 161 75.8
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 7.8e-61 237.7 161 77.0
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 1.0e-60 237.3 161 77.0
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 1.0e-60 237.3 161 77.0
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 1.0e-60 237.3 177 72.9
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 1.3e-60 236.9 161 77.0
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 1.3e-60 236.9 161 77.0
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 1.3e-60 236.9 161 77.0
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 1.3e-60 236.9 155 79.4
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.1e-59 233.8 163 77.3
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 1.5e-59 233.4 153 77.8
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 3.3e-59 232.3 160 72.5
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 5.6e-59 231.5 145 78.6
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 5.6e-59 231.5 177 66.7
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 9.5e-59 230.7 184 68.5
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 1.6e-58 229.9 161 75.8
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 6.2e-58 228.0 182 70.3
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 2.0e-56 223.0 161 72.0
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 3.2e-54 215.7 136 83.1
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 9.2e-54 214.2 125 84.8
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 1.6e-53 213.4 195 61.5
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 4.6e-53 211.8 160 70.6
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 9.0e-49 197.6 116 85.3
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 3.4e-48 195.7 128 77.3
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 2.2e-47 193.0 116 82.8
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 4.9e-47 191.8 113 84.1
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 1.2e-45 187.2 128 73.4
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 3.9e-44 182.2 106 84.9
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 8.1e-42 174.5 106 83.0
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 5.4e-38 161.8 90 85.6
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 4.6e-37 158.7 105 75.2
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 4.6e-37 158.7 90 85.6
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.8e-36 156.8 90 84.4
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 3.0e-28 129.4 140 47.9
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 5.1e-28 128.6 138 50.7
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.9e-27 126.7 76 80.3
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 4.3e-27 125.6 147 52.4
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 1.1e-25 120.9 140 46.4
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 3.4e-24 115.9 161 41.6
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 1.5e-16 90.5 207 32.4
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 8.5e-15 84.7 48 81.2
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 3.0e-12 76.3 144 38.9
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 6.7e-12 75.1 90 48.9
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 2.2e-10 70.1 150 33.3
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 5.0e-07 58.9 46 58.7
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 6.5e-07 58.5 33 81.8
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 1.4e-06 57.4 36 72.2
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 4.2e-06 55.8 81 40.7


User provided reference genes

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