Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 0.0e+00 2693.3 1444 100.0
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 7.3e-281 971.5 1574 45.4
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 9.9e-270 934.5 1558 44.8
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 9.9e-262 907.9 1541 43.8
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 1.9e-249 867.1 1579 42.9
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.6e-248 864.0 1531 42.3
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 2.4e-244 850.1 1626 41.3
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 6.5e-237 825.5 1688 39.2
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 3.8e-229 799.7 1619 41.0
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 9.3e-228 795.0 1625 39.9
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 6.1e-227 792.3 1675 40.2
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 5.1e-226 789.3 1595 40.4
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.6e-224 784.3 1565 41.2
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.7e-221 774.2 1583 39.6
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 1.1e-220 771.5 1606 40.3
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.9e-220 770.8 1604 40.0
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 9.7e-217 758.4 1605 39.9
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 4.2e-212 743.0 1616 38.1
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 5.5e-212 742.7 1642 39.0
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 4.7e-211 739.6 1611 37.7
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.0e-210 738.4 1609 38.3
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.1e-207 728.4 1600 38.4
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.6e-206 724.5 1566 39.1
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 4.7e-203 713.0 1618 38.6
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 8.8e-202 708.8 1606 38.5
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.3e-200 704.9 1592 37.6
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 3.7e-200 703.4 1596 38.0
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.2e-198 698.4 1664 37.9
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 1.7e-197 694.5 1708 37.1
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.9e-197 693.7 1654 38.1
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 1.1e-196 691.8 1618 37.8
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 5.5e-196 689.5 1649 38.2
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 9.4e-196 688.7 1615 37.3
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.2e-195 688.3 1587 37.8
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.6e-195 688.0 1581 37.3
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 2.1e-195 687.6 1644 37.5
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 6.8e-194 682.6 1584 38.1
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 8.8e-194 682.2 1597 37.6
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 5.7e-193 679.5 1637 37.0
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.5e-193 679.1 1585 39.2
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.6e-190 671.4 1588 37.5
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.9e-188 664.5 1597 36.4
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 6.1e-187 659.4 1604 36.5
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 5.2e-186 656.4 1567 37.0
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 2.0e-185 654.4 1641 37.2
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 3.4e-185 653.7 1579 38.4
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 2.2e-184 651.0 1587 36.7
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 4.1e-183 646.7 1608 35.8
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 1.1e-180 638.6 1588 36.8
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.1e-180 638.6 1577 37.7
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.3e-180 636.7 1589 36.7
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 4.7e-179 633.3 1579 36.9
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.1e-179 632.9 1585 36.7
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.0e-178 630.6 1578 36.5
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 5.8e-177 626.3 1599 36.5
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.7e-176 624.8 1583 36.6
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.4e-175 621.7 1569 36.9
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 5.4e-175 619.8 1549 36.2
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 4.6e-174 616.7 1603 35.7
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 3.3e-172 610.5 1577 36.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 9.5e-172 609.0 1632 35.4
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 3.1e-170 604.0 1595 35.0
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 4.0e-170 603.6 1612 35.9
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 4.9e-168 596.7 1628 36.1
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 4.9e-168 596.7 1564 36.2
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.9e-165 587.0 1543 36.1
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 6.6e-165 586.3 1560 35.0
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 3.3e-164 583.9 1611 35.0
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 3.3e-164 583.9 1654 34.7
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 6.8e-162 576.2 1573 36.1
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.2e-158 565.5 1599 35.0
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.1e-154 552.4 1605 33.9
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 8.9e-154 549.3 1265 36.8
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 4.1e-151 540.4 1657 33.4
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.2e-145 522.3 1521 35.3
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.2e-145 522.3 1619 33.4
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 7.6e-145 519.6 1619 33.3
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 9.3e-143 512.7 1611 32.8
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.5e-142 510.8 1534 33.3
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.7e-141 508.4 1726 33.0
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 5.1e-141 506.9 1432 35.3
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.5e-140 505.4 1602 32.0
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 3.9e-133 480.7 1540 33.9
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.5e-132 478.0 1532 32.1
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 1.6e-131 475.3 1527 33.6
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 2.8e-131 474.6 1487 33.8
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 2.4e-127 461.5 1524 32.2
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 7.1e-127 459.9 1316 34.2
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 7.9e-126 456.4 1585 31.9
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 8.7e-125 453.0 1540 32.9
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 3.3e-124 451.1 1505 34.5
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 3.7e-123 447.6 1548 32.9
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 2.6e-121 441.4 1577 32.7
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 8.4e-120 436.4 492 53.5
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 1.1e-119 436.0 1543 31.2
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 3.2e-119 434.5 1541 32.7
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 9.3e-119 433.0 1706 31.2
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.2e-118 432.6 1163 33.5
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 2.3e-117 428.3 1701 31.6
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 8.7e-117 426.4 1586 31.9
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 6.9e-114 416.8 1533 32.6
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 9.0e-114 416.4 1515 31.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 4.5e-113 414.1 1430 33.6
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.3e-112 412.5 1519 31.7
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 4.6e-110 404.1 1520 31.1
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 3.9e-109 401.0 1519 31.1
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.3e-107 396.0 1348 31.8
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.8e-107 394.8 1590 31.6
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 3.7e-107 394.4 1517 31.3
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 9.1e-106 389.8 1516 31.2
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.3e-104 386.0 1513 30.9
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 5.0e-104 384.0 1512 30.8
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 4.2e-103 380.9 1401 31.6
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 7.9e-102 376.7 1628 30.4
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.0e-101 376.3 1573 30.6
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.7e-99 369.0 1521 30.8
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 7.0e-98 363.6 774 36.0
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.5e-97 361.3 972 34.6
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 8.8e-93 346.7 1499 30.3
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.3e-92 344.7 326 60.4
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 3.1e-82 311.6 1208 32.0
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 3.4e-76 291.6 1454 28.5
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.0e-69 268.5 1487 28.6
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 9.8e-68 263.5 1588 28.3
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 4.5e-65 254.6 1462 29.4
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.9e-63 249.2 1490 27.1
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 8.9e-61 240.4 193 73.6
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 2.0e-60 239.2 1519 27.0
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.7e-59 236.1 202 68.3
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.0e-57 229.2 497 36.4
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.2e-52 213.4 663 34.1
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 7.0e-50 204.1 245 50.6
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 6.8e-45 187.6 1396 26.9
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.2e-44 186.8 1486 27.0
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 3.4e-44 185.3 551 34.5
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.2e-43 182.6 207 57.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.1e-38 166.0 485 34.0
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.8e-35 155.2 1574 25.7
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-34 153.7 462 32.0
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.4e-29 136.0 557 32.3
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 7.8e-25 120.9 88 70.5
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 2.5e-23 115.9 265 43.8
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 9.0e-21 107.5 453 30.9
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.5e-20 105.1 538 31.8
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.4e-18 98.2 355 29.3
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.5e-17 95.5 237 40.1
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.8e-16 93.2 1426 24.4
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 3.9e-16 92.0 221 35.3
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.6e-14 86.7 500 28.6
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 5.3e-13 81.6 234 33.8
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 5.8e-12 78.2 199 34.2
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.2e-09 70.5 131 38.2
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.0e-09 68.2 144 38.2
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 6.7e-08 64.7 135 36.3
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.7e-07 61.6 1347 24.3


User provided reference genes

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