Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0000930 Simmondsia chinensis HOM05D000290 ORTHO05D004630 4.6e-55 217.6 108 100.0
CiPaw.11G011800 Carya illinoinensis HOM05D000290 ORTHO05D004630 5.1e-38 161.0 93 88.2
PGR044G2145 Punica granatum HOM05D000290 ORTHO05D004630 5.1e-38 161.0 98 83.7
AUR62025716 Chenopodium quinoa HOM05D000290 ORTHO05D004630 8.7e-38 160.2 98 80.6
Lj5C100G2 Lonicera japonica HOM05D000290 ORTHO05D004630 1.1e-37 159.8 97 83.5
Hma1.2p1_0046F.1_g027510 Hydrangea macrophylla HOM05D000290 ORTHO05D004630 1.9e-37 159.1 97 83.5
SalBow5G1105 Salvia bowleyana HOM05D000290 ORTHO05D004630 2.5e-37 158.7 97 80.4
SalBow5G4635 Salvia bowleyana HOM05D000290 ORTHO05D004630 2.5e-37 158.7 97 80.4
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 4.3e-37 157.9 88 88.6
Migut.I00478 Erythranthe guttata HOM05D000290 ORTHO05D004630 5.7e-37 157.5 95 81.1
CANSAT80G1334 Cannabis sativa HOM05D000290 ORTHO05D004630 7.4e-37 157.1 97 81.4
Manes.14G055200 Manihot esculenta HOM05D000290 ORTHO05D004630 7.4e-37 157.1 97 80.4
SGA_v2.0_scaffold161G37824 Striga asiatica HOM05D000290 ORTHO05D004630 7.4e-37 157.1 97 82.5
CSS0022906 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 1.6e-36 156.0 97 80.4
RcHm_v2.0_Chr7g0190911 Rosa chinensis HOM05D000290 ORTHO05D004630 1.6e-36 156.0 96 83.3
Actinidia25610 Actinidia chinensis HOM05D000290 ORTHO05D004630 2.8e-36 155.2 95 82.1
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 2.8e-36 155.2 87 88.5
Lj4g0027510 Lotus japonicus HOM05D000290 ORTHO05D004630 3.7e-36 154.8 80 93.8
MD06G1149200 Malus domestica HOM05D000290 ORTHO05D004630 3.7e-36 154.8 97 82.5
EL10Ac7g18083 Beta vulgaris HOM05D000290 ORTHO05D004630 4.8e-36 154.5 98 78.6
HanXRQChr02g0035151 Helianthus annuus HOM05D000290 ORTHO05D004630 4.8e-36 154.5 97 78.4
Potri.015G091000 Populus trichocarpa HOM05D000290 ORTHO05D004630 6.3e-36 154.1 93 80.6
MSTRG.4588 Avicennia marina HOM05D000290 ORTHO05D004630 8.2e-36 153.7 97 79.4
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 8.2e-36 153.7 99 80.8
DCAR_026210 Daucus carota HOM05D000290 ORTHO05D004630 1.1e-35 153.3 92 83.7
PSO478G4646 Papaver somniferum HOM05D000290 ORTHO05D004630 1.1e-35 153.3 98 79.6
FvH4_5g07580 Fragaria vesca HOM05D000290 ORTHO05D004630 1.4e-35 152.9 93 84.9
Potri.012G093600 Populus trichocarpa HOM05D000290 ORTHO05D004630 1.4e-35 152.9 93 80.6
Dinv38466 Davidia involucrata HOM05D000290 ORTHO05D004630 1.8e-35 152.5 98 76.5
HanXRQChr09g0272881 Helianthus annuus HOM05D000290 ORTHO05D004630 1.8e-35 152.5 94 77.7
GSVIVG01007537001 Vitis vinifera HOM05D000290 ORTHO05D004630 1.8e-35 152.5 98 74.5
ECA232G2465 Erigeron canadensis HOM05D003221 ORTHO05D004432 2.4e-35 152.1 93 77.4
Duzib084G0271 Durio zibethinus HOM05D000290 ORTHO05D004630 3.1e-35 151.8 97 77.3
MD17G1259300 Malus domestica HOM05D000290 ORTHO05D004630 4.1e-35 151.4 97 80.4
Lalb_Chr12g0202101 Lupinus albus HOM05D000290 ORTHO05D004630 5.3e-35 151.0 97 77.3
TAR374G0669 Trochodendron aralioides HOM05D000290 ORTHO05D004630 5.3e-35 151.0 97 77.3
CSS0024917 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 6.9e-35 150.6 80 92.5
PSO017G4570 Papaver somniferum HOM05D000290 ORTHO05D004630 1.5e-34 149.4 97 78.4
ECA247G0104 Erigeron canadensis HOM05D000290 ORTHO05D004630 2.0e-34 149.1 93 77.4
Gohir.A07G053300 Gossypium hirsutum HOM05D000290 ORTHO05D004630 2.0e-34 149.1 92 80.4
Gohir.D07G057700 Gossypium hirsutum HOM05D000290 ORTHO05D004630 2.0e-34 149.1 94 81.9
Gorai.001G061200 Gossypium raimondii HOM05D000290 ORTHO05D004630 2.0e-34 149.1 94 81.9
QL10p005012 Quercus lobata HOM05D000290 ORTHO05D004630 2.0e-34 149.1 95 81.1
Solyc03g110940.3 Solanum lycopersicum HOM05D000290 ORTHO05D004630 2.0e-34 149.1 98 75.5
vmacro19237 Vaccinium macrocarpon HOM05D000290 ORTHO05D004630 2.0e-34 149.1 93 83.9
Sopen03g030130 Solanum pennellii HOM05D000290 ORTHO05D004630 2.6e-34 148.7 98 75.5
Thecc.03G123200 Theobroma cacao HOM05D000290 ORTHO05D004630 2.6e-34 148.7 97 78.4
unitig_0.g2230 Utricularia gibba HOM05D000290 ORTHO05D004630 2.6e-34 148.7 97 75.3
Glyma.17G127200 Glycine max HOM05D000290 ORTHO05D004630 3.4e-34 148.3 80 90.0
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 3.4e-34 148.3 83 86.7
Cc04_g10280 Coffea canephora HOM05D000290 ORTHO05D004630 4.5e-34 147.9 98 74.5
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 4.5e-34 147.9 78 92.3
FAN13G0034 Fragaria x ananassa HOM05D000290 ORTHO05D004630 4.5e-34 147.9 76 94.7
Gohir.A09G245100 Gossypium hirsutum HOM05D000290 ORTHO05D004630 4.5e-34 147.9 97 76.3
Psat4g064920 Pisum sativum HOM05D000290 ORTHO05D004630 4.5e-34 147.9 80 88.8
Prupe.5G156400 Prunus persica HOM05D000290 ORTHO05D004630 4.5e-34 147.9 75 94.7
arahy.Tifrunner.gnm1.ann1.RWP7TH Arachis hypogaea HOM05D000290 ORTHO05D004630 5.9e-34 147.5 96 77.1
Peaxi162Scf00089g00238 Petunia axillaris HOM05D000290 ORTHO05D004630 5.9e-34 147.5 95 77.9
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 5.9e-34 147.5 80 87.5
Ca_05562_v3 Cicer arietinum L. HOM05D000290 ORTHO05D004630 7.6e-34 147.1 98 78.6
Eucgr.K02755 Eucalyptus grandis HOM05D000290 ORTHO05D004630 1.0e-33 146.7 98 75.5
Gorai.006G270500 Gossypium raimondii HOM05D000290 ORTHO05D004630 1.0e-33 146.7 93 78.5
Nitab4.5_0005418g0070 Nicotiana tabacum HOM05D000290 ORTHO05D004630 1.0e-33 146.7 95 77.9
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 1.0e-33 146.7 78 91.0
arahy.Tifrunner.gnm1.ann1.JHQ7C4 Arachis hypogaea HOM05D000290 ORTHO05D004630 1.3e-33 146.4 76 92.1
Glyma.05G045000 Glycine max HOM05D000290 ORTHO05D004630 1.7e-33 146.0 80 86.2
Phvul.003G208300 Phaseolus vulgaris HOM05D000290 ORTHO05D004630 1.7e-33 146.0 80 86.2
Nn4g22452 Nelumbo nucifera HOM05D000290 ORTHO05D004630 3.8e-33 144.8 81 85.2
Medtr4g104070 Medicago truncatula HOM05D000290 ORTHO05D004630 5.0e-33 144.4 76 92.1
TAR446G0003 Trochodendron aralioides HOM05D000290 ORTHO05D004630 5.0e-33 144.4 78 92.3
CAN.G352.56 Capsicum annuum HOM05D000290 ORTHO05D004630 6.5e-33 144.1 75 92.0
Gohir.D09G246000 Gossypium hirsutum HOM05D000290 ORTHO05D004630 6.5e-33 144.1 93 77.4
TPR.G37534 Trifolium pratense HOM05D000290 ORTHO05D004630 1.1e-32 143.3 80 85.0
THA.LOC104825002 Tarenaya hassleriana HOM05D000290 ORTHO05D004630 3.2e-32 141.7 95 75.8
Sabra12G0068200 Salix brachista HOM05D000290 ORTHO05D004630 5.5e-32 141.0 76 88.2
Hund05650 Selenicereus undatus HOM05D000290 ORTHO05D004630 7.2e-32 140.6 97 73.2
AUR62001286 Chenopodium quinoa HOM05D000290 ORTHO05D004630 1.6e-31 139.4 76 86.8
Lsat_1_v5_gn_4_78801 Lactuca sativa HOM05D000290 ORTHO05D004630 1.6e-31 139.4 76 82.9
Lj9C475G6 Lonicera japonica HOM05D000290 ORTHO05D004630 3.6e-31 138.3 76 88.2
Solyc07g009150.3 Solanum lycopersicum HOM05D000290 ORTHO05D004630 3.6e-31 138.3 97 70.1
Sopen07g017140 Solanum pennellii HOM05D000290 ORTHO05D004630 3.6e-31 138.3 97 70.1
Peaxi162Scf00324g00333 Petunia axillaris HOM05D000290 ORTHO05D004630 4.6e-31 137.9 93 75.3
Ah.08g218050 Amaranthus hybridus HOM05D000056 ORTHO05D004630 6.1e-31 137.5 76 84.2
Nitab4.5_0006219g0020 Nicotiana tabacum HOM05D000290 ORTHO05D004630 6.1e-31 137.5 84 78.6
Nitab4.5_0028558g0010 Nicotiana tabacum HOM05D000290 ORTHO05D004630 6.1e-31 137.5 84 78.6
HPP92_002024 Vanilla planifolia HOM05D000290 ORTHO05D004630 1.8e-30 136.0 97 69.1
Cpa.g.sc4.75 Carica papaya HOM05D000290 ORTHO05D004630 2.3e-30 135.6 76 86.8
Lsat_1_v5_gn_1_29520 Lactuca sativa HOM05D000290 ORTHO05D004630 3.0e-30 135.2 80 82.5
Sed0014675 Sechium edule HOM05D003221 ORTHO05D004432 3.0e-30 135.2 97 66.0
CsaV3_1G009330 Cucumis sativus L. HOM05D000290 ORTHO05D004630 9.7e-29 130.2 97 62.9
Aqoxy3G01431 Aquilegia oxysepala HOM05D000290 ORTHO05D004630 1.7e-28 129.4 90 71.1
ClCG03G003520 Citrullus lanatus HOM05D003221 ORTHO05D004432 1.7e-28 129.4 97 63.9
BcaC07g38154 Brassica carinata HOM05D000290 ORTHO05D004630 2.2e-28 129.0 97 66.0
BcaB03g12448 Brassica carinata HOM05D000290 ORTHO05D004630 2.8e-28 128.6 97 66.0
CARHR232200 Cardamine hirsuta HOM05D000290 ORTHO05D004630 3.7e-28 128.3 95 66.3
Thhalv10026350m.g Eutrema salsugineum HOM05D000290 ORTHO05D004630 3.7e-28 128.3 99 65.7
Sed0024107 Sechium edule HOM05D003221 ORTHO05D004432 3.7e-28 128.3 97 64.9
Os01g0904200 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D004630 4.8e-28 127.9 95 61.1
Sp7g22800 Schrenkiella parvula HOM05D000290 ORTHO05D004630 6.3e-28 127.5 95 65.3
A08p21360 Brassica napus HOM05D003221 ORTHO05D004432 1.1e-27 126.7 97 66.0
BraA08t34086Z Brassica rapa HOM05D000290 ORTHO05D004630 2.4e-27 125.6 97 64.9
Dinv02921 Davidia involucrata HOM05D000290 ORTHO05D004630 2.4e-27 125.6 69 87.0
AT4G24810 Arabidopsis thaliana HOM05D000290 ORTHO05D004630 3.1e-27 125.2 99 65.7
BcaC04g20804 Brassica carinata HOM05D000290 ORTHO05D004630 4.1e-27 124.8 96 67.7
C09p38980 Brassica napus HOM05D000290 ORTHO05D004630 4.1e-27 124.8 96 67.7
BolC9t56778H Brassica oleracea HOM05D000290 ORTHO05D004630 4.1e-27 124.8 96 67.7
CDE09G0950 Ceratophyllum demersum HOM05D000290 ORTHO05D004630 4.1e-27 124.8 78 73.1
BcaB08g35409 Brassica carinata HOM05D000290 ORTHO05D004630 5.3e-27 124.4 92 68.5
A10p08400 Brassica napus HOM05D000290 ORTHO05D004630 5.3e-27 124.4 92 68.5
BraSC37t46165Z Brassica rapa HOM05D000290 ORTHO05D004630 5.3e-27 124.4 92 68.5
Carub.0007s1624 Capsella rubella HOM05D000290 ORTHO05D004630 5.3e-27 124.4 102 64.7
AT5G50330 Arabidopsis thaliana HOM05D000290 ORTHO05D004630 6.9e-27 124.0 99 64.6
Sp6g12410 Schrenkiella parvula HOM05D000290 ORTHO05D004630 1.2e-26 123.2 92 67.4
BolC8t48588H Brassica oleracea HOM05D003221 ORTHO05D004432 1.5e-26 122.9 97 63.9
Carub.0008s1037 Capsella rubella HOM05D000290 ORTHO05D004630 1.5e-26 122.9 93 65.6
Thhalv10013416m.g Eutrema salsugineum HOM05D000290 ORTHO05D004630 1.5e-26 122.9 99 63.6
Aa31LG7G11030 Aethionema arabicum HOM05D000290 ORTHO05D004630 3.4e-26 121.7 74 77.0
ATR0824G143 Amborella trichopoda HOM05D000290 ORTHO05D004630 3.4e-26 121.7 73 76.7
AL664U10010 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 4.5e-26 121.3 93 65.6
THA.LOC104811604 Tarenaya hassleriana HOM05D000290 ORTHO05D004630 5.9e-26 120.9 96 63.5
Aa31LG3G5900 Aethionema arabicum HOM05D000290 ORTHO05D004630 1.0e-25 120.2 76 75.0
AL8G24390 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 1.3e-25 119.8 75 74.7
AL7G28370 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 2.2e-25 119.0 99 63.6
COL.COLO4_03516 Corchorus olitorius HOM05D000290 ORTHO05D004630 1.5e-21 106.3 76 72.4
SEGI_25401 Sequoiadendron giganteum HOM05D000290 ORTHO05D004630 1.5e-21 106.3 73 63.0
MELO3C002336.2 Cucumis melo HOM05D000290 ORTHO05D004630 1.1e-19 100.1 164 37.2
SMO356G0040 Selaginella moellendorffii HOM05D000290 ORTHO05D004630 9.1e-19 97.1 75 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3717 Anthoceros agrestis HOM05D000290 ORTHO05D004630 4.5e-18 94.7 112 45.5
arahy.Tifrunner.gnm1.ann1.KT2U2T Arachis hypogaea HOM05D000290 ORTHO05D004630 5.5e-16 87.8 69 65.2
arahy.Tifrunner.gnm1.ann1.W1RGJC Arachis hypogaea HOM05D000290 ORTHO05D004630 1.2e-15 86.7 69 63.8
Pp3c13_11180 Physcomitrium patens HOM05D000290 ORTHO05D004630 8.8e-14 80.5 74 48.6
CBR_g8365 Chara braunii HOM05D000290 ORTHO05D004630 3.7e-12 75.1 69 44.9
Cre06.g307100 Chlamydomonas reinhardtii HOM05D000290 ORTHO05D004630 7.7e-10 67.4 75 49.3
Ciclev10020267m.g Citrus clementina HOM05D000290 ORTHO05D004630 4.7e-07 58.2 35 77.1


User provided reference genes

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