Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.6e-185 652.5 312 100.0
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.3e-142 510.0 299 77.6
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 4.9e-142 508.1 300 78.3
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 5.5e-141 504.6 299 75.9
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 5.5e-141 504.6 299 76.3
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 5.5e-141 504.6 299 76.9
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 6.0e-140 501.1 299 75.9
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.3e-139 500.0 299 75.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.8e-139 499.6 299 74.9
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.9e-139 498.4 299 75.3
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.9e-138 496.1 286 79.7
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 4.3e-138 495.0 299 76.6
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 9.6e-138 493.8 299 76.9
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.6e-137 493.0 319 72.4
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 2.8e-137 492.3 311 72.3
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 6.2e-137 491.1 299 74.2
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 6.2e-137 491.1 299 74.6
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.4e-136 490.0 299 76.3
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 3.1e-136 488.8 299 73.6
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 1.5e-135 486.5 291 75.9
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.6e-135 485.7 301 73.4
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.6e-135 485.7 299 73.6
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 7.6e-135 484.2 299 74.2
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.9e-134 482.3 292 75.0
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 3.8e-134 481.9 299 74.2
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 6.5e-134 481.1 299 73.9
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 6.5e-134 481.1 299 73.9
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 6.5e-134 481.1 299 73.9
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.1e-133 480.3 300 73.7
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.1e-133 480.3 299 71.9
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.4e-133 479.9 300 73.7
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.2e-132 476.9 299 72.9
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 2.1e-132 476.1 299 71.6
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 3.5e-132 475.3 301 72.8
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.6e-132 474.9 263 82.5
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 6.0e-132 474.6 263 82.5
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.8e-131 473.0 299 72.2
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 3.0e-131 472.2 299 71.2
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 3.0e-131 472.2 289 74.0
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 3.0e-131 472.2 292 72.9
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 5.1e-131 471.5 299 71.2
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 6.7e-131 471.1 299 72.6
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 8.7e-131 470.7 289 73.7
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 1.1e-130 470.3 301 72.8
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.9e-130 469.5 299 69.6
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.9e-130 469.5 300 70.3
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.9e-130 469.5 300 73.3
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.9e-130 469.5 300 72.0
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 2.5e-130 469.2 299 70.9
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 2.5e-130 469.2 299 70.2
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 2.5e-130 469.2 289 73.4
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 3.3e-130 468.8 299 70.2
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 9.6e-130 467.2 299 69.9
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.3e-129 466.8 302 72.8
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.3e-129 466.8 300 71.0
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.6e-129 466.5 300 73.0
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 8.2e-129 464.2 301 72.1
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 8.2e-129 464.2 301 72.8
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.1e-128 463.8 311 66.6
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 2.4e-128 462.6 299 68.9
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 3.1e-128 462.2 300 72.7
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.1e-128 461.8 285 71.2
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 2.0e-127 459.5 299 68.6
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 2.0e-127 459.5 265 80.4
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 3.4e-127 458.8 296 72.0
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 7.6e-127 457.6 321 68.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 7.6e-127 457.6 299 68.6
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.0e-126 457.2 299 69.9
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 2.9e-126 455.7 299 67.9
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 6.5e-126 454.5 299 68.6
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 4.6e-124 448.4 299 69.2
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 6.1e-124 448.0 360 62.5
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 6.1e-124 448.0 299 69.2
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.0e-123 447.2 300 70.0
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.8e-123 446.4 299 68.9
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 3.9e-123 445.3 300 70.0
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.9e-122 443.0 299 67.6
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 9.7e-122 440.7 299 68.9
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.3e-121 440.3 299 67.6
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 3.7e-121 438.7 302 68.5
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 4.8e-121 438.3 303 66.7
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 2.4e-120 436.0 299 63.9
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.2e-119 433.7 263 74.9
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.8e-118 428.7 302 68.2
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 5.0e-118 428.3 292 65.4
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.4e-117 426.8 302 67.9
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-117 426.8 302 67.9
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 1.4e-117 426.8 366 59.3
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 1.2e-116 423.7 299 66.2
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 3.0e-115 419.1 301 67.4
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.5e-114 416.8 309 65.0
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.7e-113 413.3 299 66.6
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.2e-113 412.9 262 72.5
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.6e-111 406.0 342 59.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 1.7e-110 403.3 315 62.9
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 2.7e-108 396.0 298 62.1
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 9.7e-106 387.5 264 68.6
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 4.1e-104 382.1 269 66.9
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.2e-103 380.6 209 79.9
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.4e-99 367.1 215 74.9
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 9.7e-98 360.9 299 58.2
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 3.7e-97 359.0 294 55.8
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 8.2e-97 357.8 213 72.8
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.4e-96 357.1 296 54.4
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.3e-94 350.5 289 55.4
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.6e-92 343.6 184 83.2
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 4.4e-90 335.5 241 63.1
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 5.9e-87 325.1 299 54.2
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.0e-78 295.4 198 67.7
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.6e-77 292.0 198 67.2
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 5.2e-75 285.4 184 65.8
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.6e-74 283.1 183 65.6
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 8.9e-67 258.1 222 52.3
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.3e-61 239.6 145 75.2
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 3.1e-59 233.0 320 39.1
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.9e-57 226.5 133 75.2
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 6.2e-52 208.8 185 55.1
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.2e-47 194.5 447 30.2
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 3.5e-47 193.0 278 39.9
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 6.6e-46 188.7 195 50.3
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 8.1e-44 181.8 126 69.8
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.1e-39 167.2 116 69.8
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 3.9e-38 162.9 118 65.3
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 6.0e-31 139.0 108 61.1
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.6e-23 114.4 65 81.5
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 7.4e-21 105.5 107 47.7
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 4.0e-19 99.8 167 39.5
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.9e-13 80.9 57 64.9
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 9.3e-08 62.0 58 55.2
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 3.6e-07 60.1 39 64.1


User provided reference genes

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