Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 1.2e-124 449.9 241 100.0
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 2.4e-56 223.0 224 54.9
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 2.7e-55 219.5 225 52.4
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 3.5e-55 219.2 224 54.0
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 6.0e-55 218.4 232 52.2
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 7.9e-55 218.0 229 54.1
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 1.8e-54 216.9 227 51.1
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 3.0e-54 216.1 232 50.4
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.9e-54 215.7 224 53.6
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 3.9e-54 215.7 224 53.6
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 3.9e-54 215.7 232 51.7
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 6.7e-54 214.9 228 51.8
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.5e-53 213.8 224 53.1
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 9.6e-53 211.1 230 49.6
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 2.1e-52 209.9 228 49.1
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 2.1e-52 209.9 225 50.7
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 4.8e-52 208.8 234 50.4
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 4.8e-52 208.8 225 51.6
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 2.4e-51 206.5 233 50.6
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 2.4e-51 206.5 236 48.7
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.5e-50 203.8 237 48.5
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 3.4e-50 202.6 225 50.2
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 4.5e-50 202.2 222 50.5
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 5.8e-50 201.8 228 51.8
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 5.8e-50 201.8 223 49.8
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 7.6e-50 201.4 229 51.5
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.0e-49 201.1 228 49.1
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 1.3e-49 200.7 225 48.4
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 2.9e-49 199.5 243 48.1
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 3.8e-49 199.1 226 48.7
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 6.5e-49 198.4 225 49.3
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.1e-48 197.6 236 46.6
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.1e-48 197.6 232 47.0
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.4e-48 197.2 225 51.1
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 1.9e-48 196.8 225 47.1
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 1.9e-48 196.8 225 47.1
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 1.9e-48 196.8 225 51.1
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 1.9e-48 196.8 231 52.8
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 2.5e-48 196.4 225 47.6
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 3.2e-48 196.1 225 47.6
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 5.5e-48 195.3 225 47.1
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 5.5e-48 195.3 227 48.9
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 7.1e-48 194.9 225 47.1
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 7.1e-48 194.9 232 48.7
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 9.3e-48 194.5 225 47.1
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 9.3e-48 194.5 225 47.1
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 9.3e-48 194.5 225 47.1
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 9.3e-48 194.5 226 50.0
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 1.2e-47 194.1 225 47.1
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 4.6e-47 192.2 222 49.1
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 6.0e-47 191.8 225 46.7
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.3e-46 190.7 228 48.7
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 1.8e-46 190.3 232 49.6
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 6.7e-46 188.3 217 50.2
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 6.7e-46 188.3 221 48.0
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 1.5e-45 187.2 261 45.6
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.3e-44 184.1 223 47.1
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 2.8e-44 183.0 259 42.9
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 1.8e-43 180.3 221 46.2
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 1.8e-43 180.3 222 45.5
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 3.1e-43 179.5 223 46.2
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 3.1e-43 179.5 258 42.2
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 9.0e-43 177.9 188 50.0
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 1.2e-42 177.6 227 41.9
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 1.5e-42 177.2 226 42.0
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 3.4e-42 176.0 190 50.5
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 4.5e-42 175.6 188 49.5
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 5.9e-42 175.3 213 47.9
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 5.9e-42 175.3 213 48.4
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 7.6e-42 174.9 225 47.6
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 6.5e-41 171.8 220 42.7
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.1e-40 171.0 158 55.1
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 1.1e-40 171.0 220 51.4
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.4e-40 170.6 232 44.4
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 3.2e-40 169.5 149 61.1
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 3.2e-40 169.5 175 50.9
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 5.5e-40 168.7 163 53.4
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 5.5e-40 168.7 155 57.4
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 2.1e-39 166.8 159 56.0
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 6.1e-39 165.2 256 39.5
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 2.3e-38 163.3 152 57.9
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 6.7e-38 161.8 303 34.7
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 8.7e-38 161.4 274 37.6
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 2.5e-37 159.8 147 59.9
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 3.3e-37 159.5 155 52.3
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 9.7e-37 157.9 142 55.6
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.3e-36 157.5 228 41.2
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 1.3e-36 157.5 160 49.4
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 1.3e-36 157.5 160 49.4
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 2.2e-36 156.8 224 40.6
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 2.8e-36 156.4 227 42.3
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 2.8e-36 156.4 137 57.7
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 8.2e-36 154.8 277 36.1
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 1.8e-35 153.7 162 49.4
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 2.4e-35 153.3 281 34.2
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 3.1e-35 152.9 216 39.8
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 4.1e-35 152.5 222 40.1
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 5.3e-35 152.1 143 55.9
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 5.3e-35 152.1 138 57.2
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 2.0e-34 150.2 138 56.5
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 5.9e-34 148.7 139 58.3
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 5.9e-34 148.7 143 55.9
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 5.9e-34 148.7 143 55.9
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 1.0e-33 147.9 142 53.5
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 5.0e-33 145.6 147 53.7
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 5.0e-33 145.6 143 54.5
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 1.4e-32 144.1 225 38.7
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 3.2e-32 142.9 236 36.9
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 1.0e-30 137.9 141 53.2
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 6.7e-30 135.2 224 39.7
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 1.3e-28 131.0 264 33.3
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 4.8e-28 129.0 149 50.3
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 1.1e-27 127.9 149 49.0
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 5.3e-27 125.6 137 46.0
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 6.3e-20 102.1 116 42.2
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.5e-13 80.9 65 56.9
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 2.2e-12 77.0 150 36.7
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 4.5e-10 69.3 65 44.6
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 1.0e-09 68.2 87 42.5
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 4.7e-07 59.3 84 35.7
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 8.0e-07 58.5 60 33.3


User provided reference genes

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