Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 9.8e-124 446.8 226 100.0
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 4.0e-85 318.5 221 73.8
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 5.2e-85 318.2 221 71.9
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 3.8e-83 312.0 229 71.6
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 3.8e-83 312.0 222 71.2
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 1.9e-82 309.7 229 71.2
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 4.2e-82 308.5 228 70.2
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 9.3e-82 307.4 231 68.4
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.3e-80 303.5 230 70.4
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 2.3e-80 302.8 228 68.4
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 6.6e-80 301.2 230 67.0
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 3.3e-79 298.9 221 69.7
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 2.1e-78 296.2 222 68.0
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 4.8e-78 295.0 229 67.2
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 8.1e-78 294.3 184 76.6
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 1.1e-77 293.9 225 68.0
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 1.8e-77 293.1 216 69.4
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 3.1e-77 292.4 228 68.0
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 4.0e-77 292.0 230 67.8
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 1.5e-76 290.0 224 67.0
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 1.5e-76 290.0 234 67.1
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 2.0e-76 289.7 227 67.4
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 5.8e-76 288.1 222 69.4
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 5.8e-76 288.1 221 68.3
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 9.9e-76 287.3 221 68.3
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 3.8e-75 285.4 226 65.9
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 6.4e-75 284.6 195 73.8
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 1.9e-74 283.1 229 64.6
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 5.4e-74 281.6 222 69.4
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 5.4e-74 281.6 222 66.2
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 1.6e-73 280.0 222 65.3
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 2.7e-73 279.3 238 66.0
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 2.7e-73 279.3 228 64.5
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 4.6e-73 278.5 225 63.1
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.6e-73 278.5 228 63.2
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 6.0e-73 278.1 220 65.5
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 7.9e-73 277.7 225 66.2
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 7.9e-73 277.7 228 63.2
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 7.9e-73 277.7 225 64.0
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 1.7e-72 276.6 235 62.1
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 1.5e-71 273.5 201 67.7
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 1.9e-71 273.1 189 72.0
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 1.9e-71 273.1 171 76.0
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 5.6e-71 271.6 227 62.6
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 9.6e-71 270.8 232 62.1
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 1.3e-70 270.4 214 64.5
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 1.3e-70 270.4 221 63.3
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 1.6e-70 270.0 224 63.4
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 2.1e-70 269.6 236 61.9
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 4.8e-70 268.5 284 55.3
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 8.1e-70 267.7 183 70.5
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 1.1e-69 267.3 221 63.3
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 1.8e-69 266.5 238 63.9
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 5.3e-69 265.0 237 59.9
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 9.0e-69 264.2 189 73.5
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 9.0e-69 264.2 172 75.6
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 1.2e-68 263.8 185 70.8
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 2.0e-68 263.1 228 60.1
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 2.9e-67 259.2 225 60.0
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 3.8e-67 258.8 218 62.4
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 3.8e-67 258.8 188 68.1
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 4.9e-67 258.5 225 60.9
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 3.2e-66 255.8 218 63.3
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 3.2e-66 255.8 178 71.9
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 4.2e-66 255.4 211 63.5
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 7.1e-66 254.6 227 61.2
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 1.0e-64 250.8 211 62.6
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 1.3e-64 250.4 230 59.1
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 3.0e-64 249.2 212 62.3
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 1.9e-63 246.5 188 65.4
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 7.4e-63 244.6 173 69.4
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 2.8e-62 242.7 184 63.6
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 3.7e-62 242.3 181 64.6
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 8.1e-62 241.1 230 56.1
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 1.4e-61 240.4 260 54.2
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 1.8e-61 240.0 241 56.0
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 3.1e-61 239.2 173 68.2
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 4.0e-61 238.8 231 57.6
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 9.0e-61 237.7 229 57.2
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 2.6e-60 236.1 190 63.2
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 3.4e-60 235.7 152 77.6
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 3.4e-60 235.7 212 61.3
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 1.0e-59 234.2 225 55.6
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 1.0e-59 234.2 227 55.9
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 1.7e-59 233.4 192 63.0
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 2.9e-59 232.6 240 56.2
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 3.8e-59 232.3 188 63.3
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 4.2e-58 228.8 197 59.9
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 4.2e-58 228.8 197 59.9
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 1.0e-56 224.2 189 61.4
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 2.5e-50 203.0 189 59.8
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.7e-41 172.9 99 79.8
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 2.7e-41 172.9 105 79.0
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 3.6e-41 172.6 153 58.8
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 3.9e-40 169.1 165 51.5
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 2.5e-39 166.4 146 63.7
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 1.8e-37 160.2 165 53.3
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 9.1e-37 157.9 118 72.0
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 8.8e-32 141.4 163 46.0
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 9.7e-31 137.9 147 53.1
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 6.7e-24 115.2 63 84.1
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.5e-23 114.0 64 76.6
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 4.4e-23 112.5 111 50.5
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 3.7e-22 109.4 130 51.5
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 7.7e-20 101.7 118 51.7
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 4.1e-13 79.3 107 51.4
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 4.1e-13 79.3 61 65.6
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 5.9e-12 75.5 60 61.7
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 5.0e-11 72.4 62 61.3
MCO03G440 Micromonas commoda HOM05D007115 ORTHO05D008923 1.9e-10 70.5 184 29.3
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 7.2e-10 68.6 128 37.5
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 5.2e-08 62.4 97 35.1


User provided reference genes

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