Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 0.0e+00 1129.4 566 100.0
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 0.0e+00 1127.9 566 99.8
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.4e-110 404.4 502 45.6
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 1.8e-110 404.1 576 46.2
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 2.0e-109 400.6 568 41.4
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 1.0e-108 398.3 501 46.1
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 2.7e-106 390.2 566 42.6
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 2.7e-106 390.2 506 44.1
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.8e-105 387.5 559 42.8
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 5.1e-105 386.0 566 42.0
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 6.7e-105 385.6 535 42.1
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 8.7e-105 385.2 566 42.2
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 1.6e-103 380.9 571 41.3
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 1.6e-103 380.9 513 45.0
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 3.7e-103 379.8 507 44.2
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 4.8e-103 379.4 511 43.2
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 4.8e-103 379.4 523 45.1
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 4.1e-102 376.3 516 44.8
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 9.0e-102 375.2 505 42.4
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 3.4e-101 373.2 508 42.7
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 1.0e-100 371.7 583 42.0
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.7e-100 370.9 506 42.3
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.9e-100 370.2 506 42.5
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 5.0e-100 369.4 515 41.7
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.5e-99 367.1 474 42.8
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 4.2e-99 366.3 507 42.4
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 7.2e-99 365.5 505 42.4
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 2.1e-98 364.0 515 41.6
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 2.7e-98 363.6 529 43.1
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 3.6e-98 363.2 574 39.7
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 4.6e-98 362.8 575 39.8
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 7.9e-98 362.1 514 41.2
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 1.4e-97 361.3 517 42.4
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 7.4e-96 355.5 510 42.2
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 7.4e-96 355.5 534 40.4
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 2.8e-95 353.6 505 41.6
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 3.7e-95 353.2 504 41.3
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 6.3e-95 352.4 578 40.1
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 3.1e-94 350.1 500 39.8
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 3.4e-93 346.7 498 41.4
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 5.9e-93 345.9 554 41.3
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 5.9e-93 345.9 478 41.8
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 7.7e-93 345.5 500 38.8
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 3.8e-92 343.2 540 39.4
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 6.5e-92 342.4 529 38.6
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 8.5e-92 342.0 499 40.1
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 1.4e-91 341.3 505 40.4
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 4.2e-91 339.7 591 38.2
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 3.6e-90 336.7 499 39.5
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 6.1e-90 335.9 508 41.1
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 8.8e-89 332.0 501 42.3
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 7.4e-88 328.9 512 40.0
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.7e-87 327.8 574 39.7
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 2.2e-87 327.4 505 40.6
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 2.4e-86 323.9 360 48.1
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 9.1e-86 322.0 374 47.1
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 1.3e-84 318.2 337 49.0
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 1.3e-84 318.2 546 37.9
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 1.7e-84 317.8 476 41.4
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 1.9e-83 314.3 505 39.0
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.9e-83 314.3 426 42.7
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 5.5e-83 312.8 509 39.5
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 1.2e-82 311.6 539 38.8
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 2.7e-82 310.5 546 39.4
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 3.6e-82 310.1 400 44.2
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 4.7e-82 309.7 527 40.0
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 1.8e-81 307.8 561 37.4
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 2.0e-80 304.3 507 37.9
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 4.4e-80 303.1 507 37.9
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 9.7e-80 302.0 505 37.2
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 2.2e-79 300.8 328 49.1
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 8.2e-79 298.9 379 44.1
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 1.1e-78 298.5 520 37.5
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 7.0e-78 295.8 589 38.2
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.2e-77 295.0 571 37.7
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.5e-77 293.5 541 38.6
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 2.9e-76 290.4 497 35.8
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 5.0e-76 289.7 521 38.2
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.5e-75 287.3 573 34.2
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 4.2e-75 286.6 352 45.5
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 6.1e-74 282.7 562 35.9
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 5.4e-70 269.6 542 34.7
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 5.4e-70 269.6 553 34.4
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.5e-69 266.9 596 35.6
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 3.5e-69 266.9 508 36.0
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 5.9e-69 266.2 270 50.0
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 5.0e-68 263.1 360 40.0
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 1.0e-65 255.4 622 32.3
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 6.8e-65 252.7 516 33.7
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 1.2e-58 231.9 468 35.9
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 2.0e-56 224.6 369 37.1
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 1.3e-47 195.3 363 33.9
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.9e-38 164.9 363 34.2
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 6.6e-36 156.4 338 29.6
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 1.6e-29 135.2 175 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 3.0e-28 131.0 247 32.8
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 9.9e-24 115.9 143 44.8
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 1.3e-23 115.5 386 26.4
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.7e-23 115.2 164 37.8
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.2e-23 114.8 120 46.7
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 2.4e-22 111.3 235 33.2
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.1e-17 95.9 108 42.6
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-17 95.9 127 38.6
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.8e-17 95.1 164 34.1
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 2.6e-16 91.3 112 36.6
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 2.9e-15 87.8 201 35.8
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 2.4e-14 84.7 83 48.2
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 6.0e-13 80.1 160 35.6
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 5.3e-09 67.0 91 40.7
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 1.1e-06 59.3 147 34.7
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 1.1e-06 59.3 143 35.7
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 9.3e-06 56.2 80 45.0


User provided reference genes

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