Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.7e-81 305.8 146 100.0
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.4e-75 285.4 135 100.0
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.6e-53 212.2 118 83.9
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 4.5e-53 211.5 118 83.1
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.7e-52 209.5 135 75.6
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.7e-52 209.5 131 74.8
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 4.9e-52 208.0 115 83.5
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 6.4e-52 207.6 119 79.8
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 6.4e-52 207.6 126 75.4
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 8.4e-52 207.2 126 75.4
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 8.4e-52 207.2 123 79.7
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.9e-51 206.1 118 82.2
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.9e-51 206.1 123 78.9
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.9e-51 206.1 118 80.5
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.4e-51 205.7 123 79.7
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 3.2e-51 205.3 121 77.7
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 3.2e-51 205.3 118 80.5
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.2e-51 205.3 123 79.7
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 5.5e-51 204.5 118 79.7
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 9.3e-51 203.8 114 82.5
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.2e-50 203.4 118 79.7
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.2e-50 203.4 123 78.0
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.2e-50 203.4 131 75.6
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.6e-50 203.0 118 78.8
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.6e-50 203.0 119 79.8
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.6e-50 203.0 130 73.8
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.1e-50 202.6 118 77.1
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 2.1e-50 202.6 118 78.8
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 2.7e-50 202.2 123 78.0
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 3.5e-50 201.8 118 78.8
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.5e-50 201.8 118 78.0
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 3.5e-50 201.8 120 80.0
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 4.6e-50 201.4 127 74.0
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 4.6e-50 201.4 118 78.8
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 6.0e-50 201.1 118 78.8
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 7.9e-50 200.7 108 82.4
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 7.9e-50 200.7 118 79.7
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 7.9e-50 200.7 118 78.8
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 7.9e-50 200.7 122 78.7
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 7.9e-50 200.7 119 79.8
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 7.9e-50 200.7 119 79.8
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.0e-49 200.3 118 78.0
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 1.0e-49 200.3 118 79.7
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 1.0e-49 200.3 118 80.5
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 1.0e-49 200.3 118 78.0
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.3e-49 199.9 124 75.0
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 1.3e-49 199.9 118 78.0
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 2.3e-49 199.1 118 78.8
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 2.3e-49 199.1 126 73.8
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.0e-49 198.7 120 79.2
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 3.0e-49 198.7 118 78.0
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 3.9e-49 198.4 118 77.1
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 3.9e-49 198.4 118 77.1
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.9e-49 198.4 123 78.9
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 5.1e-49 198.0 120 75.8
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 5.1e-49 198.0 120 79.2
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 5.1e-49 198.0 118 78.0
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 6.7e-49 197.6 118 79.7
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 6.7e-49 197.6 118 79.7
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.5e-48 196.4 140 69.3
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 1.5e-48 196.4 118 77.1
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.9e-48 196.1 118 78.0
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 2.5e-48 195.7 128 73.4
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.5e-48 195.7 118 77.1
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 3.3e-48 195.3 129 72.1
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 4.3e-48 194.9 118 76.3
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 7.4e-48 194.1 127 73.2
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 9.6e-48 193.7 123 77.2
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.3e-47 193.4 122 77.0
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.1e-46 190.3 119 75.6
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 1.4e-46 189.9 118 75.4
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.8e-46 189.5 132 68.9
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 3.1e-46 188.7 118 75.4
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 5.3e-46 188.0 143 68.5
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 9.0e-46 187.2 130 66.9
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 9.0e-46 187.2 144 66.0
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.2e-45 186.8 121 74.4
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 3.4e-45 185.3 123 72.4
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 5.8e-45 184.5 107 80.4
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 7.6e-45 184.1 107 77.6
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 3.8e-44 181.8 118 72.0
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 1.1e-43 180.3 110 76.4
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.4e-43 179.9 128 68.0
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.9e-43 179.5 103 83.5
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 4.2e-43 178.3 123 69.9
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 4.2e-43 178.3 133 66.2
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 7.1e-43 177.6 124 68.5
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.6e-42 176.4 100 83.0
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.6e-42 176.4 101 81.2
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 1.6e-42 176.4 96 86.5
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 6.7e-41 171.0 112 70.5
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.1e-40 170.2 118 68.6
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.1e-40 170.2 96 80.2
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 7.4e-40 167.5 96 80.2
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 2.8e-39 165.6 96 80.2
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 2.4e-38 162.5 102 73.5
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 3.1e-38 162.2 116 66.4
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 1.2e-37 160.2 122 64.8
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 6.5e-36 154.5 99 73.7
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.1e-35 153.7 105 72.4
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.9e-35 152.9 106 66.0
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 4.2e-35 151.8 106 65.1
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.0e-33 147.1 108 63.9
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 3.3e-32 142.1 109 57.8
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.7e-32 140.6 106 63.2
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.2e-29 133.7 134 52.2
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.6e-29 132.5 145 49.7
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 5.9e-29 131.3 68 86.8
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.7e-28 129.8 127 54.3
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 2.9e-28 129.0 121 56.2
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.4e-27 126.7 105 62.9
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 3.2e-27 125.6 108 53.7
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 4.2e-27 125.2 96 65.6
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.7e-24 114.8 98 58.2
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 9.1e-22 107.5 119 52.1
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.2e-18 97.1 50 90.0
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 8.0e-18 94.4 79 60.8
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.0e-17 92.4 118 42.4
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 5.2e-17 91.7 50 84.0
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 4.4e-16 88.6 50 82.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 5.7e-16 88.2 47 80.9
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 6.3e-15 84.7 99 50.5
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 2.6e-13 79.3 50 76.0
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 4.0e-09 65.5 40 70.0
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 8.8e-09 64.3 77 49.4
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 4.4e-08 62.0 71 46.5
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 2.2e-07 59.7 73 53.4
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 2.4e-06 56.2 62 53.2
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 5.3e-06 55.1 60 53.3


User provided reference genes

Program Settings