Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 0.0e+00 3315.4 1731 100.0
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 0.0e+00 3235.3 1731 98.1
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 0.0e+00 1239.9 1775 47.4
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.0e-132 479.6 1770 31.2
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 3.6e-117 427.9 1784 30.3
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 7.5e-115 420.2 1778 29.2
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.5e-110 406.0 1756 29.1
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.2e-108 397.5 1865 27.2
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 7.5e-107 393.7 1871 27.1
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 8.6e-103 380.2 1818 29.4
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.2e-100 370.9 1779 29.9
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 2.1e-96 359.0 1834 28.0
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 7.8e-96 357.1 1892 28.7
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.6e-93 348.2 1826 28.5
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 6.2e-93 347.4 1843 27.2
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 5.4e-89 334.3 1733 28.2
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 6.0e-88 330.9 1892 28.2
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 5.1e-87 327.8 1906 28.4
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 6.6e-87 327.4 1996 27.8
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.1e-86 326.6 1901 28.0
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.8e-84 319.3 736 40.6
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.8e-84 319.3 1824 28.1
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 3.1e-84 318.5 1840 28.6
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.5e-83 316.2 1946 26.9
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 8.4e-82 310.5 1914 28.4
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.3e-79 302.4 1919 27.8
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.1e-79 301.2 1851 27.4
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.8e-76 292.7 1994 27.2
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 4.4e-75 288.1 1789 26.7
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 6.4e-74 284.3 1789 27.6
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.4e-74 284.3 1798 27.0
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 8.4e-74 283.9 851 32.9
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.1e-72 279.3 1963 27.2
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 4.6e-72 278.1 1956 26.3
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 5.1e-71 274.6 1684 26.8
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 4.8e-69 268.1 671 35.5
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 1.8e-68 266.2 1967 25.8
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.2e-67 263.5 1959 25.9
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 1.3e-66 260.0 1790 26.6
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 2.9e-66 258.8 1796 25.6
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 3.8e-66 258.5 840 33.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 8.4e-66 257.3 349 46.7
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.1e-65 256.9 1881 27.5
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.4e-65 256.5 1976 26.1
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 7.1e-65 254.2 1972 25.8
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.6e-64 253.1 847 33.8
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.8e-63 249.6 1794 25.2
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 5.6e-62 244.6 2081 25.8
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 7.4e-62 244.2 1743 26.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.3e-61 243.4 1931 26.2
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 8.1e-61 240.7 845 32.7
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.4e-60 240.0 1831 25.8
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 1.5e-59 236.5 785 35.3
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 2.0e-59 236.1 1845 26.1
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.4e-59 235.3 848 32.9
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.2e-58 232.6 1833 26.5
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 1.4e-57 229.9 609 33.7
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 3.9e-55 221.9 849 32.9
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.9e-55 221.9 847 32.2
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-54 220.3 850 32.5
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.5e-54 219.9 1809 25.1
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 3.3e-54 218.8 1828 26.1
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 7.4e-54 217.6 1801 26.1
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.3e-53 216.9 1819 25.2
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 9.0e-52 210.7 1576 23.9
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 7.6e-51 207.6 1802 25.7
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 2.9e-50 205.7 1879 25.6
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.5e-50 204.5 1934 25.0
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.1e-49 203.8 1920 25.0
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 1.1e-49 203.8 1854 25.9
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.4e-49 203.4 1889 24.7
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 4.2e-49 201.8 666 35.4
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 2.1e-48 199.5 626 33.9
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 1.0e-47 197.2 1857 25.1
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 3.0e-47 195.7 1810 25.6
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.1e-46 193.7 465 40.2
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.5e-46 193.4 1952 25.4
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 5.7e-46 191.4 612 32.5
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.7e-42 179.9 1775 24.3
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 7.2e-41 174.5 1805 24.5
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 9.4e-41 174.1 1851 25.5
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.1e-40 172.9 1729 24.6
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 1.8e-39 169.9 618 33.0
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 2.6e-38 166.0 665 32.9
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 9.7e-38 164.1 1812 24.2
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.2e-37 162.9 1785 24.4
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 4.8e-37 161.8 1806 25.6
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 8.2e-37 161.0 2000 24.4
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.4e-36 159.5 1819 26.1
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 2.2e-34 152.9 524 35.5
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.5e-33 149.4 515 30.5
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.6e-32 146.7 630 31.0
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.4e-31 143.7 770 27.1
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 2.3e-31 142.9 1598 24.2
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 3.3e-30 139.0 688 30.5
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 4.4e-30 138.7 693 27.7
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 7.4e-30 137.9 284 36.6
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 8.2e-29 134.4 666 32.0
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 4.1e-28 132.1 660 31.8
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.2e-27 130.6 647 30.3
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 3.5e-27 129.0 656 32.3
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 2.2e-26 126.3 1578 23.6
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 4.2e-25 122.1 1802 23.9
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 4.2e-25 122.1 269 44.6
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 9.4e-25 120.9 643 30.3
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.6e-24 119.0 267 37.1
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 6.1e-24 118.2 665 32.0
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 8.0e-24 117.9 484 34.9
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 3.3e-22 112.5 1803 23.3
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 7.5e-22 111.3 665 30.5
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 2.4e-20 106.3 625 28.2
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 4.5e-19 102.1 685 30.7
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 5.9e-19 101.7 613 28.2
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 3.8e-18 99.0 425 30.4
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 5.0e-18 98.6 425 30.4
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 4.2e-17 95.5 422 29.6
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 4.2e-17 95.5 422 29.6
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.2e-14 87.4 108 45.4
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 7.5e-14 84.7 78 52.6
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 9.8e-14 84.3 245 33.5
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 1.8e-12 80.1 297 29.6
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 2.0e-11 76.6 56 64.3
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 2.0e-11 76.6 278 28.8
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 2.7e-11 76.3 116 40.5
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 4.5e-11 75.5 321 29.9
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 2.2e-10 73.2 87 52.9
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 5.0e-10 72.0 188 32.4
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 5.0e-10 72.0 76 50.0
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 6.5e-10 71.6 92 43.5
AUR62044126 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.5e-09 69.7 117 39.3
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 7.2e-09 68.2 66 50.0
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.6e-08 65.9 65 56.9
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 8.0e-08 64.7 277 26.7
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 8.0e-08 64.7 73 52.1
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 6.8e-07 61.6 56 55.4
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.0e-06 60.1 84 39.3
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.4e-06 58.9 221 27.6
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 5.7e-06 58.5 62 50.0
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 7.5e-06 58.2 59 55.9
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 7.5e-06 58.2 59 57.6


User provided reference genes

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