Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 4.2e-184 647.9 332 100.0
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.1e-130 469.5 339 72.0
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.1e-127 459.5 339 68.7
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 3.4e-117 425.6 341 66.6
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 2.9e-116 422.5 333 64.9
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.2e-115 419.1 333 64.0
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 3.0e-113 412.5 333 62.8
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.1e-113 411.8 333 63.4
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 4.3e-112 408.7 335 63.3
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 9.7e-112 407.5 334 64.1
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.3e-111 407.1 335 63.0
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.6e-111 406.8 338 63.9
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.8e-111 406.0 345 60.9
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.8e-111 406.0 345 61.4
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 6.3e-111 404.8 345 61.2
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.4e-110 403.7 335 62.4
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 4.1e-110 402.1 338 62.7
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.2e-109 400.6 333 59.8
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.6e-109 399.4 335 63.0
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 2.6e-109 399.4 334 62.0
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 3.8e-108 395.6 333 61.6
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.1e-107 394.0 333 59.8
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.1e-107 394.0 332 60.8
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 7.2e-107 391.3 334 60.8
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 7.2e-107 391.3 333 61.9
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.6e-106 390.2 328 61.9
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 6.1e-106 388.3 334 61.1
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 7.9e-106 387.9 334 61.7
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 7.9e-106 387.9 333 57.7
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.0e-105 387.5 333 57.7
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 3.9e-105 385.6 334 61.7
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 3.9e-105 385.6 333 60.7
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 4.3e-104 382.1 333 60.1
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 5.7e-104 381.7 335 60.9
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 5.7e-104 381.7 333 59.8
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 7.4e-104 381.3 336 60.1
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 7.4e-104 381.3 336 61.0
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 7.4e-104 381.3 335 60.3
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 6.3e-103 378.3 328 61.0
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.8e-102 376.7 333 58.9
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 4.1e-102 375.6 333 58.0
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.9e-102 374.8 332 59.6
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.9e-102 374.8 339 59.6
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.2e-101 374.0 333 57.7
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 2.6e-101 372.9 327 61.2
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.6e-101 372.9 333 59.5
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.9e-100 369.4 339 59.0
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.9e-100 369.4 334 60.2
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 3.8e-100 369.0 334 59.6
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 8.5e-100 367.9 329 59.9
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.4e-99 367.1 333 57.4
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.1e-98 363.2 332 57.8
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.7e-98 362.8 333 59.2
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.1e-98 361.7 331 59.5
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.9e-97 359.0 333 55.0
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 8.8e-97 357.8 334 56.0
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.1e-96 357.5 328 60.1
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.1e-96 357.5 333 54.1
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.5e-96 357.1 333 55.0
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.4e-96 355.5 329 57.1
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.4e-96 355.5 333 58.3
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.7e-96 355.1 333 56.5
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.3e-95 354.0 333 57.4
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.7e-95 353.6 341 56.3
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 2.2e-95 353.2 331 56.5
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.2e-95 353.2 339 55.8
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 2.8e-95 352.8 387 50.6
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.7e-95 352.4 333 56.2
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 4.8e-95 352.1 340 56.2
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 6.3e-95 351.7 338 56.5
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 8.2e-95 351.3 333 54.7
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.8e-94 350.1 327 57.5
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.0e-93 346.7 325 56.6
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.9e-93 345.1 333 53.8
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 7.7e-93 344.7 354 55.4
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.3e-92 344.0 332 56.9
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 8.5e-92 341.3 273 61.5
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.5e-91 339.7 322 55.3
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 4.2e-91 339.0 332 54.8
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 2.1e-90 336.7 341 55.4
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.4e-89 334.0 332 53.9
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.8e-89 333.6 342 52.9
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 3.0e-89 332.8 334 55.4
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 8.8e-89 331.3 280 60.7
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-88 330.9 330 54.5
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.0e-88 330.1 338 55.6
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 4.4e-88 328.9 345 52.2
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 4.4e-88 328.9 373 51.2
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 2.2e-87 326.6 269 60.6
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 2.4e-86 323.2 337 54.0
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-85 320.9 325 53.2
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.6e-85 319.7 338 53.8
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.6e-85 319.7 338 53.8
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.6e-85 319.7 338 53.8
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 7.7e-85 318.2 332 54.8
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 2.2e-84 316.6 334 54.8
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 6.5e-84 315.1 334 54.2
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.5e-83 313.9 344 52.3
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.9e-83 313.5 248 65.7
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 5.5e-83 312.0 327 54.4
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.6e-82 310.5 339 52.5
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.6e-82 310.5 335 51.9
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.7e-82 309.7 329 50.5
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.4e-81 307.4 327 53.8
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.8e-81 307.0 329 52.9
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 3.0e-81 306.2 273 56.8
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 4.0e-81 305.8 332 50.6
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 6.7e-81 305.1 378 47.4
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 6.7e-81 305.1 331 52.6
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.5e-80 303.9 341 51.6
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.5e-80 303.9 341 51.6
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 2.0e-80 303.5 334 50.6
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 5.7e-80 302.0 307 53.7
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 3.7e-79 299.3 333 49.2
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 6.3e-79 298.5 336 50.9
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 6.3e-79 298.5 333 51.4
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.4e-78 297.4 340 49.4
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 4.1e-78 295.8 339 49.3
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.2e-77 294.3 341 50.4
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 3.5e-77 292.7 335 49.3
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 5.9e-77 292.0 341 50.1
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 7.7e-77 291.6 341 50.1
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.7e-76 290.4 336 50.0
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 2.9e-76 289.7 330 52.1
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 4.2e-75 285.8 221 67.4
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 4.2e-75 285.8 237 58.6
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 5.5e-75 285.4 337 49.9
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 5.2e-73 278.9 370 46.2
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 4.4e-72 275.8 267 56.2
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 8.3e-71 271.6 329 48.6
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.9e-67 260.4 333 47.1
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.2e-66 257.7 315 48.6
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.0e-65 253.1 317 47.0
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.6e-64 250.0 296 48.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 7.0e-62 241.9 323 46.1
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.1e-59 234.6 309 48.9
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 9.5e-59 231.5 235 53.6
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 9.2e-54 214.9 187 57.2
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.5e-53 213.0 327 44.0
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 3.0e-52 209.9 247 47.0
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 8.6e-52 208.4 330 41.2
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 5.6e-51 205.7 155 64.5
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 4.7e-50 202.6 323 42.4
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 6.2e-50 202.2 216 52.3
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 8.0e-50 201.8 163 62.0
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-49 201.4 203 58.1
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.4e-49 201.1 203 58.1
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.1e-49 199.9 203 57.1
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 9.2e-46 188.3 332 39.5
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.7e-45 186.8 322 40.4
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.7e-42 176.0 170 59.4
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.1e-38 162.2 148 52.7
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.7e-37 160.2 173 53.2
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.1e-35 154.8 128 58.6
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.5e-35 153.7 202 51.0
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.6e-34 151.0 129 57.4
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.4e-33 147.1 211 45.5
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.2e-30 136.3 133 56.4
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 3.5e-29 133.3 139 54.0
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.5e-29 133.3 146 50.7
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 3.9e-28 129.8 125 49.6
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 2.6e-24 117.1 106 55.7
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 3.8e-23 113.2 98 56.1
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 2.1e-21 107.5 219 34.7
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 9.0e-17 92.0 142 37.3
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.6e-13 79.7 90 44.4
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.7e-12 75.9 306 26.8
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.5e-11 73.9 63 54.0
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 3.3e-11 73.6 61 65.6
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 2.0e-08 64.3 66 50.0
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 3.4e-08 63.5 234 28.6


User provided reference genes

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