Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.6e-160 569.3 282 100.0
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.2e-99 367.1 287 65.5
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 8.5e-93 344.4 291 60.5
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.4e-90 337.0 284 61.6
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 2.3e-90 336.3 280 60.0
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 4.4e-89 332.0 280 60.7
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 9.8e-89 330.9 281 60.5
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.3e-88 330.5 282 58.9
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.8e-88 329.3 280 61.4
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 6.3e-88 328.2 288 59.0
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.1e-87 327.4 289 58.5
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.1e-87 327.4 283 59.4
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.4e-87 326.2 289 58.1
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 3.1e-87 325.9 278 60.1
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 5.4e-87 325.1 295 58.3
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 7.0e-87 324.7 307 55.7
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.2e-86 323.9 286 58.0
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.6e-86 323.6 291 57.4
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.6e-86 323.6 280 59.3
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 2.0e-86 323.2 288 58.7
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 5.9e-86 321.6 293 54.9
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 5.9e-86 321.6 280 57.5
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.7e-86 321.2 291 57.0
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.9e-85 319.3 283 56.9
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 5.0e-85 318.5 279 58.1
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 6.5e-85 318.2 283 58.0
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 8.5e-85 317.8 282 57.8
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.1e-84 317.4 293 55.3
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.5e-84 317.0 279 56.6
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.9e-84 316.6 277 57.8
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.9e-84 316.6 293 54.9
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 2.5e-84 316.2 280 57.9
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.5e-84 316.2 285 56.5
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 3.2e-84 315.8 286 56.6
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 3.2e-84 315.8 282 57.1
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 4.2e-84 315.5 277 58.1
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.2e-84 314.7 277 57.4
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 7.2e-84 314.7 283 56.2
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 7.2e-84 314.7 292 56.5
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.6e-83 313.5 280 56.1
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 2.1e-83 313.2 282 55.3
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.1e-83 313.2 287 56.8
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 4.7e-83 312.0 279 57.0
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 8.0e-83 311.2 285 56.5
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.4e-82 310.5 277 56.3
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.8e-82 310.1 279 55.6
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.3e-82 309.7 292 54.5
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 4.0e-82 308.9 278 53.2
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 6.8e-82 308.1 287 52.6
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.2e-81 307.4 293 52.6
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.0e-81 306.6 287 54.7
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 3.4e-81 305.8 285 55.4
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 4.4e-81 305.4 280 58.2
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 5.7e-81 305.1 278 53.2
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 7.5e-81 304.7 283 55.5
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 9.8e-81 304.3 268 57.1
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 9.8e-81 304.3 281 56.6
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 2.8e-80 302.8 279 55.2
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 4.9e-80 302.0 282 56.4
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 4.9e-80 302.0 279 55.2
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 6.3e-80 301.6 284 54.6
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 8.3e-80 301.2 284 54.2
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 8.3e-80 301.2 291 55.7
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.1e-79 300.8 275 55.3
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.1e-79 299.3 283 54.4
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.1e-79 299.3 283 54.4
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 4.1e-79 298.9 280 55.4
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 5.4e-79 298.5 278 54.7
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 5.4e-79 298.5 287 51.6
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 7.0e-79 298.1 271 56.1
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 2.3e-77 293.1 279 55.2
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 3.8e-77 292.4 279 54.1
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 6.6e-77 291.6 300 52.3
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 8.6e-77 291.2 279 54.5
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 8.6e-77 291.2 282 53.2
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.5e-76 290.4 280 54.3
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 9.5e-76 287.7 261 56.7
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 3.6e-75 285.8 280 52.1
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 8.0e-75 284.6 286 50.7
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.8e-74 283.5 291 50.5
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 3.0e-74 282.7 292 52.4
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.2e-73 280.8 300 51.3
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 2.6e-73 279.6 287 52.6
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 4.4e-73 278.9 287 51.6
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.1e-71 274.2 278 50.4
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 5.9e-70 268.5 254 56.3
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.7e-69 266.9 286 52.1
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 8.6e-69 264.6 291 49.5
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.1e-68 264.2 286 49.7
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 3.3e-68 262.7 286 50.7
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 7.3e-68 261.5 279 50.9
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 9.5e-68 261.2 284 51.4
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 1.2e-67 260.8 285 51.6
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.6e-67 260.4 286 50.3
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 2.1e-67 260.0 285 51.6
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 4.7e-67 258.8 268 51.9
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 6.2e-67 258.5 285 51.2
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 6.2e-67 258.5 285 51.2
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 8.0e-67 258.1 284 50.7
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.0e-66 257.7 285 51.2
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.0e-66 257.7 285 51.2
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.0e-66 257.7 284 51.1
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 6.8e-66 255.0 284 50.7
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 8.9e-66 254.6 284 49.6
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 8.9e-66 254.6 284 49.6
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 3.4e-65 252.7 284 50.4
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 3.7e-64 249.2 249 51.0
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.4e-63 246.5 284 49.6
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 7.8e-62 241.5 221 57.9
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.3e-61 240.7 292 47.3
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 3.3e-60 236.1 248 50.0
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 4.7e-59 232.3 209 57.9
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.8e-58 230.3 276 43.5
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 2.3e-58 229.9 280 45.4
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.7e-56 223.8 221 53.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 2.4e-55 219.9 203 56.2
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 2.4e-55 219.9 209 56.0
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 8.6e-53 211.5 294 39.1
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 4.3e-52 209.1 232 50.9
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 2.8e-51 206.5 275 43.3
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.3e-50 203.4 218 50.9
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 4.4e-49 199.1 167 64.7
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.7e-48 197.2 172 54.7
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 2.9e-32 143.3 281 33.5
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.5e-28 131.0 134 50.7
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.9e-28 130.6 112 59.8
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.3e-26 122.5 83 63.9
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 7.6e-25 118.6 151 41.7
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 1.7e-24 117.5 83 66.3
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 8.1e-19 98.6 83 51.8
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 5.7e-12 75.9 256 28.1
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 6.5e-08 62.4 78 47.4


User provided reference genes

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