Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 8.9e-152 540.4 311 100.0
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.0e-103 379.8 281 79.4
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 2.0e-103 379.8 281 76.9
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 5.9e-103 378.3 281 73.7
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 5.9e-103 378.3 284 69.7
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 5.9e-103 378.3 281 78.3
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.9e-102 375.9 281 66.9
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 7.2e-101 371.3 281 80.4
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 2.7e-100 369.4 276 66.7
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.7e-100 369.4 282 79.4
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 6.1e-100 368.2 281 77.2
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.4e-99 367.1 281 66.2
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 8.8e-99 364.4 282 78.7
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 2.6e-98 362.8 283 76.3
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 5.7e-98 361.7 283 79.5
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 7.4e-98 361.3 282 74.5
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 4.8e-97 358.6 281 72.6
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 4.8e-97 358.6 283 78.8
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 6.3e-97 358.2 284 73.9
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.4e-96 356.3 284 78.9
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 2.4e-96 356.3 283 66.1
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 3.1e-96 355.9 282 78.4
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 4.1e-96 355.5 282 78.7
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.2e-95 354.0 282 78.4
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.0e-95 353.2 282 77.7
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.6e-95 352.8 281 77.2
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 3.5e-95 352.4 285 63.5
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.5e-95 352.4 284 64.8
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 4.5e-95 352.1 283 78.4
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.2e-94 349.7 281 77.2
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 2.2e-94 349.7 280 76.4
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.9e-94 349.4 288 75.0
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 8.5e-94 347.8 281 77.6
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.5e-93 346.3 281 77.2
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 4.2e-93 345.5 281 76.9
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.5e-93 345.1 297 71.0
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.1e-92 343.2 282 70.2
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 6.1e-92 341.7 285 76.5
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 1.0e-91 340.9 284 65.1
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.0e-91 340.9 284 73.6
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.3e-91 339.7 282 65.2
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 3.0e-91 339.3 274 74.8
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 6.7e-91 338.2 282 77.7
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.3e-90 335.9 285 68.4
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 3.3e-90 335.9 282 73.8
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 4.4e-90 335.5 281 74.4
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 4.4e-90 335.5 283 76.7
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 4.4e-90 335.5 283 71.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.7e-89 333.6 282 71.6
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 2.8e-89 332.8 287 73.5
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 4.8e-89 332.0 282 68.8
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.1e-88 330.9 282 63.1
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 9.1e-88 327.8 284 64.1
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 1.2e-87 327.4 284 63.7
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.6e-87 327.0 282 62.4
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.6e-87 327.0 290 73.1
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.5e-87 325.9 288 74.3
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.5e-87 325.9 288 75.7
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 5.9e-87 325.1 284 63.7
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 5.9e-87 325.1 292 72.3
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 5.9e-87 325.1 299 60.9
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 7.7e-87 324.7 284 63.7
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 2.9e-86 322.8 286 61.2
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 2.9e-86 322.8 287 70.0
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 3.8e-86 322.4 284 63.0
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 6.5e-86 321.6 285 61.1
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.5e-85 320.5 293 69.6
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.9e-85 320.1 258 63.2
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 4.2e-85 318.9 295 68.5
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 5.5e-85 318.5 286 60.8
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 7.2e-85 318.2 313 65.2
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.2e-84 317.4 281 71.5
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.1e-84 316.6 281 71.2
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.7e-84 316.2 282 69.5
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.7e-84 316.2 264 76.9
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.7e-84 316.2 283 61.8
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 6.1e-84 315.1 284 71.1
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.4e-83 313.9 285 64.6
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.4e-83 313.9 240 80.0
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.8e-83 313.5 282 58.9
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 6.8e-83 311.6 256 76.6
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.2e-82 310.8 315 56.8
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.5e-82 310.5 256 76.2
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 3.4e-82 309.3 296 65.5
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.2e-81 306.6 284 62.3
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 8.3e-81 304.7 249 75.9
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 4.1e-80 302.4 286 61.5
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 7.0e-80 301.6 231 80.5
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 9.1e-80 301.2 316 66.1
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 2.0e-79 300.1 243 79.0
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.5e-79 299.3 231 80.1
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 5.9e-79 298.5 286 57.0
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.3e-78 297.4 294 65.6
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.3e-78 297.4 294 65.3
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-78 296.6 288 66.3
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 6.5e-78 295.0 285 56.8
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 6.5e-78 295.0 267 59.9
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.6e-76 290.4 281 68.7
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.7e-76 289.7 333 55.9
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.7e-76 289.7 333 55.9
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 8.0e-76 288.1 281 68.7
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.0e-75 287.7 264 59.5
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.8e-75 287.0 281 67.6
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 8.8e-75 284.6 282 55.3
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 4.4e-74 282.3 234 65.0
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 4.4e-74 282.3 286 61.5
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 2.2e-73 280.0 286 53.8
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.3e-70 270.0 233 76.8
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 2.3e-70 270.0 287 53.3
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.9e-69 266.9 327 56.6
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.9e-69 266.9 327 56.6
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.2e-68 264.2 231 74.5
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 2.6e-66 256.5 233 72.5
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 7.5e-66 255.0 284 51.4
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.3e-65 254.2 189 82.0
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 3.7e-65 252.7 238 56.7
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 8.3e-65 251.5 234 60.3
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.2e-64 249.6 245 67.3
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 3.2e-64 249.6 241 71.8
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 3.2e-64 249.6 189 84.1
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 9.2e-64 248.1 293 51.5
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.6e-63 247.3 247 55.5
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 1.4e-56 224.2 233 66.5
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-54 217.6 273 48.4
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-51 208.0 244 63.9
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 4.0e-51 206.1 165 86.7
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 7.5e-50 201.8 190 77.4
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-49 201.1 243 50.6
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.3e-46 191.0 146 84.9
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 2.3e-46 190.3 235 49.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 2.3e-46 190.3 235 49.8
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 1.1e-43 181.4 222 48.2
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 6.8e-43 178.7 284 40.5
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.3e-41 174.5 105 81.9
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.2e-39 167.9 149 81.2
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 9.6e-37 158.3 162 58.6
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 2.1e-36 157.1 181 51.4
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 1.5e-34 151.0 286 46.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 4.4e-34 149.4 246 42.7
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 7.6e-34 148.7 216 54.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 4.6e-31 139.4 274 47.8
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 8.7e-30 135.2 156 67.9
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.9e-27 125.6 167 44.9
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 3.8e-25 119.8 293 32.4
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.9e-24 117.5 92 65.2
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.3e-20 104.8 103 60.2
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.4e-17 92.4 50 84.0
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 3.5e-15 86.7 99 51.5
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 7.9e-15 85.5 109 44.0
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 1.8e-14 84.3 47 78.7
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 3.0e-14 83.6 45 80.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 5.3e-11 72.8 83 51.8
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 7.6e-10 68.9 69 47.8
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 1.3e-09 68.2 46 73.9
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 4.9e-09 66.2 44 75.0
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 2.7e-07 60.5 101 37.6
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 7.9e-07 58.9 110 31.8


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