Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 3.4e-292 1007.7 532 100.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.5e-138 496.5 547 56.9
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 7.6e-135 485.0 552 53.6
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 6.7e-131 471.9 567 52.7
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.9e-130 470.3 550 54.4
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.9e-130 470.3 550 54.4
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 9.6e-130 468.0 553 53.7
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 5.3e-128 462.2 543 53.2
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.5e-127 460.7 558 54.1
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 2.2e-126 456.8 602 48.8
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.2e-126 456.8 552 51.8
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 5.0e-126 455.7 548 53.6
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 2.5e-125 453.4 562 51.8
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 3.3e-122 443.0 551 52.3
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 5.7e-122 442.2 549 50.8
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 5.7e-122 442.2 539 52.5
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 6.3e-121 438.7 536 53.0
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 1.4e-120 437.6 551 53.0
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.8e-120 437.2 550 52.5
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.5e-119 434.1 593 49.2
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.7e-118 430.6 567 50.3
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.7e-118 430.6 551 51.4
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.0e-118 429.1 547 51.4
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.1e-117 427.9 584 49.5
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.4e-117 427.6 524 53.4
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.4e-117 427.6 546 50.7
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 3.2e-117 426.4 542 50.4
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 4.2e-117 426.0 542 50.6
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 9.4e-117 424.9 551 51.2
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.7e-116 423.3 551 51.4
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.8e-115 420.6 542 50.2
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.3e-113 414.5 551 51.0
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.3e-113 414.5 546 50.5
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.8e-112 410.6 551 50.1
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 4.1e-112 409.5 540 50.7
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 4.1e-112 409.5 581 46.8
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 9.1e-112 408.3 545 49.7
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 1.5e-111 407.5 539 49.5
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 5.9e-111 405.6 558 48.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.0e-110 404.8 582 47.4
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.0e-110 404.8 541 50.1
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 2.2e-110 403.7 545 49.5
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 3.8e-110 402.9 547 48.4
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 3.8e-110 402.9 540 49.6
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.1e-109 401.4 549 48.3
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.4e-109 401.0 549 48.1
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.9e-109 400.6 537 48.2
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 4.2e-109 399.4 549 46.8
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 9.4e-109 398.3 545 49.7
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.2e-108 397.9 563 47.6
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 2.7e-108 396.7 537 49.5
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 6.1e-108 395.6 539 48.2
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 8.8e-107 391.7 544 47.8
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 8.8e-107 391.7 564 45.9
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 2.0e-106 390.6 562 45.7
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 2.6e-106 390.2 556 48.2
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.3e-105 387.9 541 47.1
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 2.8e-105 386.7 562 48.0
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 4.8e-105 386.0 590 45.3
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 8.2e-105 385.2 467 52.9
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.8e-104 384.0 559 47.6
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 7.0e-104 382.1 543 47.0
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 2.0e-103 380.6 589 45.3
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 7.7e-103 378.6 510 49.6
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 5.0e-102 375.9 546 46.7
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 2.5e-101 373.6 544 46.7
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 7.2e-101 372.1 538 46.8
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 9.4e-101 371.7 547 45.7
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 2.1e-100 370.5 548 45.8
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.0e-99 368.2 538 46.7
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.4e-99 367.9 546 47.1
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.8e-99 367.5 565 45.1
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 2.0e-98 364.0 555 45.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 3.7e-97 359.8 545 46.2
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.3e-97 359.0 567 44.3
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 9.1e-96 355.1 649 41.1
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 1.2e-95 354.8 546 45.2
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.2e-95 354.8 467 51.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 3.5e-95 353.2 562 43.8
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 2.2e-94 350.5 540 44.4
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.2e-93 346.7 445 50.3
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 4.7e-92 342.8 543 44.8
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 2.3e-91 340.5 540 44.1
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.0e-90 337.4 541 44.2
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 9.8e-90 335.1 336 56.0
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 4.8e-89 332.8 464 46.6
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 1.8e-88 330.9 543 43.8
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 4.1e-88 329.7 543 43.8
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 9.1e-88 328.6 545 45.3
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.0e-86 325.1 539 43.4
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.0e-86 325.1 537 43.6
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.2e-86 323.9 588 41.7
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 2.7e-84 317.0 546 43.0
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.0e-83 315.1 551 42.1
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.2e-82 311.6 534 43.6
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.7e-78 297.7 572 37.9
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 5.0e-78 296.2 544 41.4
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.5e-77 294.7 456 43.2
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 7.3e-77 292.4 540 40.9
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 8.9e-75 285.4 310 51.6
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.5e-74 284.6 479 41.1
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 8.3e-73 278.9 542 40.0
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 1.2e-71 275.0 550 38.7
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 4.6e-71 273.1 497 41.6
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 4.6e-71 273.1 497 41.6
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.3e-70 271.6 393 47.8
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.1e-69 268.5 300 51.3
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.4e-64 250.8 576 36.6
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 4.6e-63 246.5 375 47.7
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 4.3e-61 240.0 552 36.8
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 4.4e-58 229.9 293 47.4
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 8.6e-54 215.7 476 37.4
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 6.2e-52 209.5 326 42.6
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 6.2e-52 209.5 446 39.5
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 8.1e-52 209.1 447 39.4
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 2.1e-39 167.9 578 30.1
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 3.5e-39 167.2 583 31.2
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.5e-37 161.0 437 34.8
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 2.8e-36 157.5 260 42.7
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 6.0e-31 139.8 528 28.8
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 7.9e-31 139.4 186 40.9
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 9.3e-24 115.9 263 39.5
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 2.3e-22 111.3 181 45.9
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 3.0e-22 110.9 232 40.1
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 8.4e-17 92.8 64 68.8
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 3.2e-16 90.9 210 37.6
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 2.3e-14 84.7 174 31.0
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.9e-14 84.0 108 53.7
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 191 37.2
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 5.7e-13 80.1 186 31.7
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 8.2e-12 76.3 136 43.4
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.1e-11 75.9 206 35.0
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.6e-10 71.2 167 35.9
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 1.4e-08 65.5 275 29.1
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 3.6e-07 60.8 108 44.4
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 3.6e-07 60.8 108 44.4
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 3.6e-07 60.8 108 44.4
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 3.6e-07 60.8 108 44.4
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 3.6e-07 60.8 108 44.4
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 3.6e-07 60.8 108 44.4
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 1.0e-06 59.3 42 61.9


User provided reference genes

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