Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 3.2e-306 1054.3 546 100.0
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 1.3e-251 872.8 539 77.9
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 3.0e-251 871.7 539 79.8
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.1e-250 869.8 539 82.0
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 7.3e-250 867.1 539 81.4
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 2.8e-249 865.1 539 79.0
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 3.6e-249 864.8 540 81.7
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 4.0e-248 861.3 539 81.4
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 1.2e-247 859.8 539 77.0
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 2.0e-247 859.0 539 77.0
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 2.0e-247 859.0 539 81.3
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 6.4e-246 854.0 539 80.9
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 8.4e-246 853.6 540 80.6
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 1.1e-245 853.2 539 76.6
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 5.4e-245 850.9 539 79.8
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 5.4e-245 850.9 539 79.8
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 7.1e-245 850.5 539 75.9
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 9.3e-245 850.1 539 79.4
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 2.7e-244 848.6 542 80.3
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 4.6e-244 847.8 539 80.5
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 1.0e-243 846.7 540 76.7
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 1.0e-243 846.7 542 77.1
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 1.7e-243 845.9 536 77.2
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 1.7e-243 845.9 538 80.1
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.0e-243 845.1 539 80.1
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 3.0e-243 845.1 542 76.9
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 8.7e-243 843.6 540 79.8
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 7.3e-242 840.5 539 76.3
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 6.2e-241 837.4 533 79.5
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 8.1e-241 837.0 539 75.0
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 1.1e-240 836.6 544 77.2
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 1.1e-240 836.6 540 78.0
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 1.4e-240 836.3 546 78.4
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 1.8e-240 835.9 540 79.4
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 1.8e-240 835.9 542 74.0
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 2.4e-240 835.5 544 75.2
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 2.4e-240 835.5 544 75.2
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 4.0e-240 834.7 533 79.4
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 5.3e-240 834.3 539 74.6
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 6.9e-240 833.9 544 76.7
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 1.5e-239 832.8 542 78.8
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 2.0e-239 832.4 544 77.4
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.4e-239 831.6 539 78.8
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 5.8e-239 830.9 539 74.0
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 7.6e-239 830.5 540 78.1
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 7.6e-239 830.5 540 78.5
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 9.9e-239 830.1 544 74.8
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 9.9e-239 830.1 544 74.8
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 1.3e-238 829.7 610 70.7
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.2e-238 828.9 539 77.4
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 4.9e-238 827.8 540 74.6
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 4.9e-238 827.8 538 78.4
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 6.4e-238 827.4 544 77.0
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 6.4e-238 827.4 544 74.8
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 8.4e-238 827.0 540 77.6
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.1e-237 826.6 535 78.7
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 1.9e-237 825.9 539 78.8
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 1.9e-237 825.9 560 75.5
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 4.2e-237 824.7 540 76.9
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 7.1e-237 823.9 544 73.5
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 7.1e-237 823.9 540 77.4
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 9.3e-237 823.5 540 76.1
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 4.6e-236 821.2 539 77.2
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 6.0e-236 820.8 544 76.1
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.0e-235 820.1 535 72.7
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.7e-235 819.3 540 74.4
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 2.3e-235 818.9 542 73.8
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 3.6e-233 811.6 537 74.9
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 6.2e-233 810.8 568 72.4
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 5.3e-232 807.7 604 67.4
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 6.9e-232 807.4 604 67.2
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 1.4e-229 799.7 555 73.2
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 3.2e-229 798.5 537 73.4
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 9.3e-229 797.0 542 76.0
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.2e-228 796.6 577 69.5
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 7.9e-228 793.9 539 74.2
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 1.1e-226 790.0 531 77.2
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 3.4e-223 778.5 549 70.1
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 1.5e-218 763.1 630 63.7
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 5.7e-218 761.1 542 73.6
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 3.6e-212 741.9 530 67.9
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 6.1e-212 741.1 542 68.3
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 1.8e-211 739.6 534 69.3
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 1.9e-210 736.1 550 72.4
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 9.7e-210 733.8 535 68.4
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 2.2e-206 722.6 452 82.1
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 3.0e-203 712.2 522 69.7
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.0e-195 687.2 553 64.0
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 1.4e-195 686.8 539 65.3
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 3.0e-195 685.6 400 81.2
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 8.0e-188 661.0 544 62.5
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 4.4e-186 655.2 579 58.4
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 5.7e-186 654.8 541 67.1
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 2.5e-181 639.4 757 48.3
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.3e-179 632.9 540 62.0
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 5.4e-176 621.7 377 79.3
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 2.7e-175 619.4 440 70.2
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 3.5e-175 619.0 376 79.8
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 1.2e-170 604.0 537 56.1
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 9.8e-170 600.9 534 54.7
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 5.4e-160 568.5 365 74.8
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 8.0e-156 554.7 535 52.0
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 5.8e-138 495.4 498 50.4
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 2.2e-137 493.4 389 64.8
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 2.9e-137 493.0 373 63.8
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.6e-132 477.2 338 65.4
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.3e-129 467.6 490 51.4
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 3.4e-114 416.4 278 73.4
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 9.3e-112 408.3 268 74.3
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 6.5e-105 385.6 625 36.3
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 6.9e-99 365.5 377 55.4
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 7.2e-96 355.5 220 76.8
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 4.6e-95 352.8 325 59.1
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 2.4e-91 340.5 272 64.7
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 8.8e-78 295.4 404 42.3
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 7.7e-66 255.8 238 58.0
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.0e-65 255.4 158 74.7
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 2.9e-65 253.8 192 68.2
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 5.0e-65 253.1 544 30.1
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 2.0e-61 241.1 601 28.8
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 4.4e-61 240.0 157 73.9
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.4e-59 234.2 154 74.0
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 3.5e-58 230.3 152 71.7
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 1.0e-54 218.8 170 64.7
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 2.3e-54 217.6 139 76.3
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 7.3e-48 196.1 239 48.5
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.6e-47 193.7 152 67.1
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.0e-46 190.7 152 65.8
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 6.8e-46 189.5 163 56.4
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 8.9e-46 189.1 819 22.7
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 4.1e-43 180.3 232 40.9
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 5.4e-43 179.9 141 63.8
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 2.7e-42 177.6 137 63.5
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 6.6e-41 172.9 109 75.2
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 1.7e-36 158.3 190 46.8
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 7.3e-32 142.9 115 67.0
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 8.3e-28 129.4 85 72.9
Sc25g0000530 Simmondsia chinensis HOM05D003301 ORTHO05D003665 2.1e-07 61.6 234 23.5
GSVIVG01015317001 Vitis vinifera HOM05D003301 ORTHO05D003665 4.8e-07 60.5 238 22.3
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.4e-06 58.9 53 56.6
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 6.9e-06 56.6 110 33.6


User provided reference genes

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