Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 4.0e-254 880.9 445 100.0
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 1.1e-203 713.4 431 81.7
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 4.3e-200 701.4 433 79.9
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.8e-198 696.0 435 80.2
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 1.3e-191 673.3 435 78.4
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 1.2e-189 666.8 434 76.7
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 4.5e-189 664.8 437 76.7
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 7.7e-189 664.1 431 77.5
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 1.9e-187 659.4 432 75.5
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 9.4e-187 657.1 433 75.3
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 1.0e-185 653.7 435 76.1
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 1.4e-185 653.3 434 75.3
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 5.1e-185 651.4 435 74.9
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 6.7e-185 651.0 437 75.1
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 2.0e-184 649.4 432 74.5
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 9.7e-184 647.1 433 73.2
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 9.7e-184 647.1 438 73.7
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 1.3e-183 646.7 433 73.0
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 3.7e-183 645.2 434 74.9
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 1.1e-182 643.7 432 74.1
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 1.4e-182 643.3 434 74.0
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 1.4e-182 643.3 433 75.1
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 2.4e-182 642.5 439 74.5
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 2.4e-182 642.5 431 75.6
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 3.1e-182 642.1 441 73.2
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 4.1e-182 641.7 436 74.3
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 5.3e-182 641.3 442 73.3
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 5.3e-182 641.3 429 75.5
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 7.0e-182 641.0 433 74.8
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 7.0e-182 641.0 433 74.8
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 1.2e-181 640.2 442 73.3
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 1.5e-181 639.8 433 74.6
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 1.5e-181 639.8 444 72.7
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 2.0e-181 639.4 433 75.1
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 2.6e-181 639.0 437 73.5
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 1.3e-180 636.7 437 73.5
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 1.3e-180 636.7 433 74.4
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 6.5e-180 634.4 444 71.6
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 6.5e-180 634.4 434 72.8
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 8.5e-180 634.0 434 73.5
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 3.2e-179 632.1 434 73.0
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 9.4e-179 630.6 434 73.0
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 3.6e-178 628.6 444 71.4
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 6.1e-178 627.9 439 71.8
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 8.0e-178 627.5 468 69.0
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 2.3e-177 625.9 441 73.5
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 3.0e-177 625.5 433 72.7
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 8.8e-177 624.0 437 72.3
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 3.3e-176 622.1 440 71.1
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 4.4e-176 621.7 436 72.5
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 9.7e-176 620.5 425 71.1
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 2.8e-175 619.0 437 71.4
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 2.8e-175 619.0 438 72.6
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 4.8e-175 618.2 428 71.0
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 6.3e-175 617.8 432 69.2
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.1e-174 617.1 442 71.0
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 1.8e-174 616.3 404 76.2
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 3.1e-174 615.5 430 70.0
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 4.1e-174 615.1 426 70.9
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 5.3e-174 614.8 435 72.2
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 3.5e-173 612.1 437 72.1
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 5.9e-173 611.3 436 72.0
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 1.7e-172 609.8 435 71.0
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 1.7e-172 609.8 434 71.0
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 2.9e-172 609.0 434 71.2
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 2.9e-172 609.0 434 71.2
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 2.9e-172 609.0 377 78.5
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 3.8e-172 608.6 434 71.0
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 5.0e-172 608.2 426 71.4
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.9e-171 606.3 435 71.0
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 1.9e-171 606.3 410 73.2
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 4.2e-171 605.1 434 70.5
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 5.5e-171 604.7 425 69.9
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 1.2e-170 603.6 430 72.6
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 1.2e-170 603.6 430 72.6
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.6e-170 603.2 439 69.2
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 1.6e-170 603.2 478 65.9
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 2.1e-170 602.8 438 69.9
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 2.7e-170 602.4 434 70.3
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 3.6e-170 602.1 435 71.0
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 4.7e-170 601.7 430 71.6
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 4.7e-170 601.7 430 71.6
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 6.1e-170 601.3 426 70.0
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.0e-169 600.5 390 74.1
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 1.4e-169 600.1 435 70.1
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 1.8e-169 599.7 415 71.8
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.8e-169 599.7 436 69.5
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 2.3e-169 599.4 415 71.8
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 3.0e-169 599.0 390 73.8
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 1.2e-168 597.0 427 69.1
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 2.6e-168 595.9 377 76.9
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 6.3e-167 591.3 440 67.0
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 1.2e-165 587.0 447 68.2
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 1.3e-164 583.6 447 67.8
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 1.7e-164 583.2 433 67.7
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 2.2e-164 582.8 456 64.7
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 3.8e-164 582.0 434 67.7
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.2e-162 577.0 441 68.3
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 4.7e-162 575.1 433 67.4
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 9.1e-158 560.8 431 68.2
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 1.1e-155 553.9 394 68.0
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 2.5e-155 552.7 436 64.0
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 2.3e-153 546.2 434 67.1
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 1.0e-148 530.8 522 57.3
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 2.5e-147 526.2 375 73.1
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 6.6e-140 501.5 342 72.5
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 3.4e-136 489.2 479 57.2
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 1.4e-129 467.2 409 56.7
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 5.2e-129 465.3 312 73.7
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 2.7e-125 453.0 300 76.0
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 2.4e-121 439.9 293 74.7
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 4.0e-113 412.5 272 73.5
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 7.6e-112 408.3 382 58.1
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 2.2e-111 406.8 436 51.4
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 2.7e-109 399.8 392 53.6
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 3.9e-108 396.0 407 54.8
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.8e-92 344.0 281 67.6
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 2.1e-85 320.5 410 45.6
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 1.8e-84 317.4 215 74.4
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.0e-79 301.6 255 68.2
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 1.4e-76 291.2 218 68.8
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 3.0e-52 210.3 138 76.8
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 7.5e-51 205.7 138 75.4
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.3e-47 194.9 140 72.1
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 3.0e-44 183.7 399 33.6
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 3.0e-44 183.7 398 33.4
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 1.5e-43 181.4 417 33.6
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 1.7e-42 177.9 186 59.7
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 3.8e-39 166.8 106 77.4
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 2.0e-32 144.4 91 72.5
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.0e-28 132.1 88 77.3
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-23 115.5 85 62.4
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 2.9e-18 97.4 99 49.5
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 1.6e-16 91.7 63 61.9
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.1e-16 91.3 50 76.0
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 6.8e-12 76.3 49 67.3
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 1.2e-11 75.5 59 67.8
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 2.3e-07 61.2 331 26.3
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 3.0e-07 60.8 373 26.0
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 2.5e-06 57.8 374 25.4
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 5.6e-06 56.6 304 27.6


User provided reference genes

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