Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 5.9e-211 737.3 369 100.0
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.3e-64 251.1 371 48.2
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 1.6e-62 244.2 384 45.3
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 6.2e-59 232.3 369 46.1
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.3e-53 213.8 365 43.6
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 8.1e-51 205.3 388 42.0
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.6e-49 200.3 393 41.5
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 5.8e-49 199.1 289 48.8
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 1.4e-47 194.5 374 39.8
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.9e-47 194.1 343 42.3
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.3e-45 188.0 366 42.6
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 3.0e-45 186.8 364 42.6
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 4.3e-44 183.0 358 40.5
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 2.8e-43 180.3 350 40.3
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 2.8e-43 180.3 365 40.0
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 1.2e-41 174.9 408 38.2
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.0e-41 174.1 372 40.6
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 7.6e-41 172.2 359 40.1
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 7.6e-41 172.2 361 39.6
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 9.9e-41 171.8 365 38.4
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 2.2e-40 170.6 373 38.6
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.2e-40 170.6 362 41.7
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.1e-39 168.3 366 38.5
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 1.2e-38 164.9 351 38.2
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 2.7e-38 163.7 361 40.2
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.0e-37 161.8 348 40.5
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 1.7e-37 161.0 302 39.7
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 1.7e-37 161.0 368 39.9
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.3e-37 160.6 344 39.5
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.9e-37 159.8 344 39.8
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 5.1e-37 159.5 387 37.7
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 1.1e-36 158.3 371 39.1
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 1.1e-36 158.3 431 35.5
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 2.5e-36 157.1 340 40.0
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 2.5e-36 157.1 344 39.5
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 2.5e-36 157.1 369 38.2
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 3.3e-36 156.8 368 38.0
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 4.3e-36 156.4 384 37.5
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 9.6e-36 155.2 348 39.1
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.1e-35 154.1 379 37.5
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.8e-35 152.9 385 38.4
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.8e-35 152.9 400 37.5
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 1.1e-34 151.8 392 37.0
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 1.8e-34 151.0 366 37.4
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.8e-34 151.0 341 38.1
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 2.4e-34 150.6 388 37.9
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 4.0e-34 149.8 335 38.2
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 5.3e-34 149.4 390 37.2
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 6.9e-34 149.1 362 40.3
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 9.0e-34 148.7 389 36.5
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 9.0e-34 148.7 367 38.4
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 1.5e-33 147.9 335 37.9
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 2.6e-33 147.1 400 36.0
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.7e-32 144.4 373 34.6
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.8e-32 143.3 389 37.0
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 2.4e-31 140.6 403 35.5
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 2.4e-31 140.6 364 36.8
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 4.2e-31 139.8 379 35.1
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 2.1e-30 137.5 345 37.1
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 3.5e-30 136.7 389 36.0
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.0e-29 135.2 347 34.9
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.3e-29 134.8 359 35.9
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 5.6e-28 129.4 366 35.8
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 1.3e-27 128.3 340 35.3
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 1.3e-27 128.3 336 37.5
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 2.1e-27 127.5 385 34.5
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 4.8e-27 126.3 270 40.0
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 6.2e-27 125.9 369 34.7
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 6.2e-27 125.9 347 33.4
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 1.4e-26 124.8 349 39.0
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.8e-26 124.4 372 36.0
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 3.1e-26 123.6 360 35.8
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 2.0e-25 120.9 351 36.8
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 2.6e-25 120.6 298 39.6
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.3e-24 118.2 177 44.6
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 2.2e-24 117.5 394 34.5
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 6.5e-24 115.9 372 32.3
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 8.4e-24 115.5 352 35.8
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 1.4e-23 114.8 357 33.3
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 1.4e-23 114.8 362 36.5
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 5.5e-23 112.8 354 36.2
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.2e-22 111.7 340 35.9
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.6e-22 111.3 383 31.1
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 4.6e-22 109.8 205 41.5
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.8e-21 107.8 255 41.2
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 3.0e-21 107.1 265 37.7
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 3.9e-21 106.7 399 33.3
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 5.1e-21 106.3 332 34.3
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 6.7e-21 105.9 269 37.5
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.5e-20 104.8 249 37.3
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.5e-20 104.8 337 34.1
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 2.5e-20 104.0 354 31.6
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 9.6e-20 102.1 364 33.2
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.3e-19 101.7 371 33.4
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 3.7e-19 100.1 403 32.3
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 2.4e-18 97.4 170 40.0
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 4.1e-18 96.7 272 37.9
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 2.0e-17 94.4 324 33.0
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 3.4e-17 93.6 252 36.5
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 2.2e-16 90.9 385 31.7
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 2.2e-16 90.9 351 34.5
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.8e-16 90.1 347 30.3
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 6.5e-16 89.4 142 45.8
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.1e-15 88.6 356 32.3
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 4.2e-15 86.7 360 29.4
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.5e-15 86.3 273 34.8
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 7.1e-15 85.9 349 31.5
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.2e-14 85.1 237 37.1
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.2e-14 85.1 237 37.1
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 1.6e-14 84.7 379 31.1
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 2.7e-14 84.0 364 32.4
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 2.3e-13 80.9 301 31.2
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 1.1e-12 78.6 368 31.0
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.5e-12 78.2 349 30.1
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 5.7e-12 76.3 338 32.2
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.6e-11 74.7 322 31.1
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 1.1e-10 72.0 347 28.0
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 1.8e-10 71.2 336 29.8
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 3.1e-10 70.5 181 37.0
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 1.2e-09 68.6 363 27.3
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.0e-09 67.8 158 32.9
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 3.4e-09 67.0 286 32.5
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 4.5e-09 66.6 401 28.2
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 7.7e-09 65.9 273 33.7
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 9.4e-07 58.9 337 30.9
SEGI_16969 Sequoiadendron giganteum HOM05D016559 ORTHO05D019650 1.2e-06 58.5 298 30.2
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 7.9e-06 55.8 397 28.5


User provided reference genes

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