Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.8e-37 158.7 75 100.0
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 2.4e-26 121.7 80 76.2
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 9.1e-26 119.8 80 73.8
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 1.2e-25 119.4 81 72.8
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.6e-25 118.2 80 72.5
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.6e-25 118.2 80 72.5
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 3.5e-25 117.9 81 71.6
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 4.5e-25 117.5 81 72.8
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 7.7e-25 116.7 70 75.7
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.7e-24 115.5 73 71.2
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.7e-24 115.5 70 77.1
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.7e-24 115.5 69 78.3
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 2.2e-24 115.2 81 71.6
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 2.2e-24 115.2 70 74.3
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 3.8e-24 114.4 81 69.1
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 5.0e-24 114.0 81 70.4
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 8.5e-24 113.2 81 69.1
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 8.5e-24 113.2 81 69.1
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 8.5e-24 113.2 68 79.4
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.1e-23 112.8 80 70.0
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.1e-23 112.8 83 69.9
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 1.4e-23 112.5 70 74.3
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.9e-23 112.1 77 70.1
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.9e-23 112.1 69 73.9
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.9e-23 112.1 81 69.1
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 2.5e-23 111.7 77 70.1
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 2.5e-23 111.7 81 67.9
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.5e-23 111.7 69 72.5
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 2.5e-23 111.7 81 69.1
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 3.2e-23 111.3 81 67.9
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.2e-23 111.3 70 74.3
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.2e-23 111.3 80 71.2
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 3.2e-23 111.3 81 69.1
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 4.2e-23 110.9 70 75.7
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 4.2e-23 110.9 71 73.2
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 7.2e-23 110.2 64 79.7
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 9.4e-23 109.8 76 72.4
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 9.4e-23 109.8 69 75.4
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 1.2e-22 109.4 82 68.3
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.2e-22 109.4 69 75.4
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.2e-22 109.4 82 67.1
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.6e-22 109.0 81 67.9
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 1.6e-22 109.0 69 76.8
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 2.1e-22 108.6 70 75.7
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.1e-22 108.6 70 74.3
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.7e-22 108.2 73 67.1
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 2.7e-22 108.2 71 70.4
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.7e-22 108.2 81 67.9
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 2.7e-22 108.2 70 71.4
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 3.6e-22 107.8 74 70.3
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.7e-22 107.5 81 66.7
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 4.7e-22 107.5 76 69.7
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 6.1e-22 107.1 71 69.0
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 8.0e-22 106.7 70 70.0
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.0e-21 106.3 81 66.7
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.0e-21 106.3 71 69.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.4e-21 105.9 69 73.9
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.4e-21 105.9 70 68.6
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 1.8e-21 105.5 63 76.2
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.8e-21 105.5 79 67.1
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.8e-21 105.5 70 72.9
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.8e-21 105.5 76 68.4
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.8e-21 105.5 69 69.6
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 2.3e-21 105.1 58 82.8
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 2.3e-21 105.1 69 73.9
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 2.3e-21 105.1 77 67.5
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 3.0e-21 104.8 58 82.8
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 3.0e-21 104.8 71 70.4
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.0e-21 104.8 70 68.6
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.0e-21 104.8 76 67.1
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 3.9e-21 104.4 77 64.9
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.9e-21 104.4 81 65.4
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.9e-21 104.4 70 70.0
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 3.9e-21 104.4 65 73.8
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 5.2e-21 104.0 61 75.4
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 5.2e-21 104.0 78 66.7
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 6.7e-21 103.6 81 63.0
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 6.7e-21 103.6 81 65.4
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 6.7e-21 103.6 76 68.4
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 8.8e-21 103.2 58 81.0
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 8.8e-21 103.2 58 81.0
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 8.8e-21 103.2 61 77.0
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 8.8e-21 103.2 59 81.4
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 8.8e-21 103.2 80 65.0
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 8.8e-21 103.2 80 65.0
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 8.8e-21 103.2 80 65.0
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 8.8e-21 103.2 81 66.7
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 8.8e-21 103.2 79 64.6
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.1e-20 102.8 61 75.4
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.1e-20 102.8 80 65.0
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.1e-20 102.8 70 71.4
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 1.1e-20 102.8 63 71.4
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 1.5e-20 102.4 77 64.9
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 2.0e-20 102.1 69 68.1
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 2.6e-20 101.7 67 68.7
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 2.6e-20 101.7 59 78.0
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.6e-20 101.7 59 78.0
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 4.4e-20 100.9 59 76.3
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 4.4e-20 100.9 65 73.8
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 5.7e-20 100.5 66 71.2
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 5.7e-20 100.5 68 69.1
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 7.4e-20 100.1 65 75.4
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 9.7e-20 99.8 57 78.9
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 1.3e-19 99.4 58 77.6
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.3e-19 99.4 72 66.7
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.7e-19 99.0 49 91.8
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.7e-19 99.0 47 91.5
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.7e-19 99.0 81 63.0
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 2.2e-19 98.6 71 69.0
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 2.2e-19 98.6 57 75.4
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.2e-19 98.6 74 68.9
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 2.2e-19 98.6 63 74.6
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 3.7e-19 97.8 63 66.7
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 3.7e-19 97.8 63 66.7
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 3.7e-19 97.8 55 78.2
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 4.8e-19 97.4 58 75.9
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 4.8e-19 97.4 46 91.3
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 4.8e-19 97.4 49 83.7
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 6.3e-19 97.1 78 60.3
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 8.2e-19 96.7 49 83.7
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 1.1e-18 96.3 49 87.8
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 1.1e-18 96.3 80 60.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.4e-18 95.9 56 82.1
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 1.4e-18 95.9 75 60.0
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.8e-18 95.5 72 65.3
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.8e-18 95.5 72 65.3
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.4e-18 95.1 69 65.2
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 2.4e-18 95.1 69 66.7
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 2.4e-18 95.1 69 66.7
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.4e-18 95.1 49 83.7
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 3.1e-18 94.7 69 65.2
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 3.1e-18 94.7 69 65.2
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 3.1e-18 94.7 69 65.2
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 3.1e-18 94.7 46 87.0
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 5.3e-18 94.0 52 76.9
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 5.3e-18 94.0 68 69.1
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 5.3e-18 94.0 46 87.0
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 7.0e-18 93.6 69 65.2
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.6e-17 92.4 60 70.0
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.6e-17 92.4 59 72.9
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 5.9e-17 90.5 47 76.6
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 7.7e-17 90.1 43 88.4
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.7e-16 89.0 57 70.2
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.7e-16 89.0 82 52.4
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.9e-16 88.2 70 62.9
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 3.8e-16 87.8 75 57.3
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 1.9e-15 85.5 42 81.0
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.6e-14 82.4 73 57.5
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.6e-14 82.4 73 57.5
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.3e-13 78.6 71 54.9
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 1.1e-10 69.7 57 63.2
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.4e-10 69.3 53 66.0
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 2.9e-08 61.6 50 60.0
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 2.1e-06 55.5 43 60.5


User provided reference genes

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