Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2588.5 1282 100.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 2070.0 1284 78.7
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 2055.4 1284 78.8
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 2050.8 1284 78.7
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2034.6 1283 78.1
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 2026.9 1267 78.7
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2011.1 1289 77.2
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2009.2 1289 77.2
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1984.1 1290 76.4
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1971.8 1294 75.7
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1970.7 1290 75.6
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1962.6 1297 74.6
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1960.3 1290 74.8
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1951.4 1294 74.6
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1949.5 1291 75.2
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1944.5 1295 75.1
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1937.5 1287 74.7
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1934.1 1290 74.1
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1933.3 1285 75.1
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1930.6 1290 73.6
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1929.8 1291 74.4
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1928.3 1313 73.3
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1927.9 1295 73.7
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1927.5 1288 74.4
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1926.8 1287 73.7
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1924.4 1290 73.3
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1923.7 1294 74.0
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1915.2 1293 74.2
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1912.1 1287 74.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1902.9 1291 73.0
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1902.1 1290 73.0
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1902.1 1292 73.1
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1901.3 1293 72.9
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1901.3 1290 73.6
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1897.9 1293 72.8
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1896.3 1313 72.6
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1888.6 1290 72.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1887.8 1293 72.7
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1883.2 1293 72.2
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1879.0 1290 72.6
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1879.0 1290 72.9
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1878.6 1290 72.1
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1878.2 1287 73.0
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1876.3 1290 72.5
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1876.3 1290 72.5
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1874.8 1290 71.9
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1288 71.9
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1873.2 1288 71.7
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1870.9 1290 72.3
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1870.5 1287 72.5
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1869.7 1287 71.1
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1865.9 1288 71.4
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1865.9 1290 72.0
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1864.7 1289 71.9
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1863.6 1292 71.8
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1857.8 1286 71.9
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1855.1 1290 71.9
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1855.1 1291 71.3
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1852.0 1280 72.2
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1851.6 1289 70.8
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1851.6 1288 71.3
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1850.5 1290 71.2
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1848.2 1290 71.6
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1846.6 1289 70.9
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1846.6 1535 63.5
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1846.2 1287 71.5
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1846.2 1289 71.8
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1844.7 1289 70.8
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1843.9 1287 70.8
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1843.9 1289 70.7
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1842.4 1292 70.6
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1842.4 1289 70.6
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1839.7 1291 70.6
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1838.9 1359 68.8
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1838.2 1288 70.3
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1838.2 1288 70.3
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1835.8 1288 70.4
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1834.3 1316 69.9
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1834.3 1295 71.8
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1830.5 1288 70.3
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1820.8 1288 71.2
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1819.7 1301 70.1
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1811.6 1297 69.5
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1800.4 1279 70.4
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1796.9 1290 70.2
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1792.7 1287 70.5
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1771.1 1357 66.3
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1749.6 1188 72.9
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1743.4 1266 69.1
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1725.7 1288 66.4
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1705.6 1189 71.3
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1683.3 1283 66.3
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1594.3 1258 63.5
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1590.9 1077 74.5
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1590.1 1103 72.0
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1583.9 1125 70.3
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1545.0 1037 74.4
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1543.9 1291 60.0
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1536.5 1064 72.3
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1481.8 1060 69.9
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1480.7 1122 68.5
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1471.4 1092 69.0
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1392.5 955 73.7
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1377.5 860 78.5
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1371.3 1047 67.5
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1277.3 1426 49.0
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1201.4 1290 52.1
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1180.2 1391 47.2
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1124.8 748 72.1
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1085.5 804 68.2
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.3e-308 1063.5 893 61.8
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 2.7e-287 992.6 1038 53.3
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 1.3e-284 983.8 1155 46.3
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.3e-265 920.6 612 76.0
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.2e-249 866.7 544 77.6
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 9.8e-245 851.3 866 53.9
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 3.1e-206 723.4 439 78.8
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 3.5e-202 709.9 1438 33.8
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 6.9e-174 615.9 480 64.8
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.3e-156 558.5 306 85.9
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.2e-155 553.9 515 56.7
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 4.5e-117 427.2 316 65.5
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 6.4e-103 380.2 205 86.3
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.0e-92 344.7 320 58.1
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 6.6e-92 343.6 372 47.3
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.0e-88 332.0 194 77.3
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 1.0e-84 319.7 261 60.2
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 6.2e-82 310.5 172 82.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.9e-75 288.9 256 60.9
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 4.3e-75 287.7 159 84.9
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 5.3e-73 280.8 223 64.6
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 3.5e-69 268.1 152 82.2
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.5e-67 261.9 262 51.5
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-64 253.1 257 52.1
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-64 253.1 257 52.1
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-64 253.1 257 52.1
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 4.5e-64 251.1 180 66.1
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 1.4e-57 229.6 202 59.4
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.9e-55 221.1 150 73.3
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 7.1e-54 217.2 152 67.8
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.6e-53 216.1 476 31.5
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.7e-53 215.3 132 76.5
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 8.2e-50 203.8 146 69.9
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 5.5e-46 191.0 143 60.1
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 4.3e-43 181.4 195 49.7
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.9e-40 171.0 109 71.6
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.3e-39 169.9 120 71.7
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 5.0e-39 167.9 98 79.6
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.0e-39 167.9 107 73.8
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.0e-39 167.9 109 71.6
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 4.2e-38 164.9 132 60.6
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.1e-37 162.5 109 69.7
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.1e-37 162.5 109 69.7
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.1e-37 162.5 109 70.6
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 2.3e-36 159.1 102 73.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.3e-34 153.3 98 79.6
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.6e-32 145.6 81 77.8
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.5e-31 140.6 78 76.9
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 9.4e-30 137.1 123 57.7
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 1.8e-25 122.9 65 83.1
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.4e-25 122.5 91 64.8
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 4.2e-22 111.7 107 51.4
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 4.2e-22 111.7 111 53.2
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 4.8e-18 98.2 57 78.9
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.2e-18 97.4 62 71.0
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 8.2e-18 97.4 67 64.2
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 6.5e-15 87.8 81 56.8
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 6.5e-15 87.8 85 51.8
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.6e-13 83.2 719 21.0
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-11 77.0 99 45.5
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.6e-11 75.9 69 49.3
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 7.5e-11 74.3 50 70.0
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 2.7e-08 65.9 107 33.6
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.3e-07 63.5 52 61.5
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.9e-06 59.7 33 81.8


User provided reference genes

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