Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0009630 Simmondsia chinensis HOM05D000461 ORTHO05D009042 6.2e-140 500.7 246 100.0
Dinv08335 Davidia involucrata HOM05D000461 ORTHO05D009042 1.4e-67 260.4 252 56.0
Cfa020516 Carpinus fangiana HOM05D000461 ORTHO05D009768 1.0e-65 254.2 209 63.6
CiPaw.11G175500 Carya illinoinensis HOM05D000461 ORTHO05D009042 1.9e-64 250.0 239 58.2
Ah.04g164980 Amaranthus hybridus HOM05D000461 ORTHO05D009042 3.3e-64 249.2 259 55.6
Thecc.07G072900 Theobroma cacao HOM05D000461 ORTHO05D009042 5.6e-64 248.4 256 53.5
QL08p018706 Quercus lobata HOM05D000461 ORTHO05D009042 3.6e-63 245.7 212 60.8
Hma1.2p1_1003F.1_g246730 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 1.0e-62 244.2 208 60.6
QL93p2023_0091 Quercus lobata HOM05D000461 ORTHO05D009042 4.0e-62 242.3 212 59.9
CSS0025788 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 8.9e-62 241.1 256 52.7
Dinv22369 Davidia involucrata HOM05D000461 ORTHO05D009042 2.0e-61 240.0 258 51.6
TWI39G0508 Tripterygium wilfordii HOM05D000461 ORTHO05D009042 4.4e-61 238.8 228 57.9
Prupe.4G189000 Prunus persica HOM05D000461 ORTHO05D009042 1.7e-60 236.9 212 58.5
Potri.001G405800 Populus trichocarpa HOM05D000461 ORTHO05D009042 3.7e-60 235.7 198 61.6
PGR031G2091 Punica granatum HOM05D000461 ORTHO05D009042 3.7e-60 235.7 180 64.4
Eucgr.F03352 Eucalyptus grandis HOM05D000461 ORTHO05D009042 8.3e-60 234.6 203 60.6
Psat5g246400 Pisum sativum HOM05D000461 ORTHO05D009042 2.4e-59 233.0 241 52.7
Cpa.g.sc80.106 Carica papaya HOM05D000461 ORTHO05D009042 1.6e-58 230.3 209 56.5
Solyc07g063530.3 Solanum lycopersicum HOM05D000461 ORTHO05D009042 1.6e-58 230.3 256 48.4
RcHm_v2.0_Chr5g0035191 Rosa chinensis HOM05D000461 ORTHO05D009042 5.9e-58 228.4 182 61.5
Duzib213G0849 Durio zibethinus HOM05D000461 ORTHO05D009042 1.3e-57 227.3 261 49.4
Medtr2g080290 Medicago truncatula HOM05D000461 ORTHO05D009042 2.3e-57 226.5 198 57.6
Nn1g03924 Nelumbo nucifera HOM05D000461 ORTHO05D009042 2.3e-57 226.5 179 63.7
COL.COLO4_09469 Corchorus olitorius HOM05D000461 ORTHO05D009768 5.0e-57 225.3 209 56.5
Ciclev10009303m.g Citrus clementina HOM05D000461 ORTHO05D009042 6.6e-57 224.9 251 49.0
Lalb_Chr25g0286691 Lupinus albus HOM05D000461 ORTHO05D009042 6.6e-57 224.9 198 58.6
FAN21G1502 Fragaria x ananassa HOM05D000461 ORTHO05D009042 8.6e-57 224.6 210 55.7
Nitab4.5_0000297g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 1.1e-56 224.2 251 49.4
A03p57230 Brassica napus HOM05D000461 ORTHO05D009042 1.5e-56 223.8 208 56.7
BraA03t14789Z Brassica rapa HOM05D000461 ORTHO05D009042 1.5e-56 223.8 208 56.7
Thhalv10026109m.g Eutrema salsugineum HOM05D000461 ORTHO05D009042 1.5e-56 223.8 193 60.1
Ca_29614_v3 Cicer arietinum L. HOM05D000461 ORTHO05D009042 1.9e-56 223.4 200 56.5
FAN11G0265 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.9e-56 223.4 190 58.4
Manes.03G116000 Manihot esculenta HOM05D000461 ORTHO05D009042 1.9e-56 223.4 220 57.7
MD11G1238100 Malus domestica HOM05D000461 ORTHO05D009042 3.3e-56 222.6 178 61.2
Glyma.13G281300 Glycine max HOM05D000461 ORTHO05D009042 5.6e-56 221.9 211 57.8
Gohir.A01G068300 Gossypium hirsutum HOM05D000461 ORTHO05D009042 5.6e-56 221.9 262 48.5
BcaC06g32696 Brassica carinata HOM05D000461 ORTHO05D009042 9.5e-56 221.1 209 56.0
C07p55420 Brassica napus HOM05D000461 ORTHO05D009042 9.5e-56 221.1 209 56.0
BolC7t46022H Brassica oleracea HOM05D000461 ORTHO05D009042 9.5e-56 221.1 209 56.0
Sabra16G0269500 Salix brachista HOM05D000461 ORTHO05D009042 9.5e-56 221.1 224 53.6
MSTRG.15210 Avicennia marina HOM05D000461 ORTHO05D009042 1.2e-55 220.7 196 58.2
CANSAT11G1238 Cannabis sativa HOM05D000461 ORTHO05D009042 2.1e-55 219.9 177 60.5
FAN16G2536 Fragaria x ananassa HOM05D000461 ORTHO05D009042 2.1e-55 219.9 188 58.0
Phvul.005G086500 Phaseolus vulgaris HOM05D000461 ORTHO05D009042 2.1e-55 219.9 256 51.2
CARHR235060 Cardamine hirsuta HOM05D000461 ORTHO05D009042 2.8e-55 219.5 193 57.5
CsaV3_3G006020 Cucumis sativus L. HOM05D000461 ORTHO05D009042 3.6e-55 219.2 179 63.1
Glyma.12G220000 Glycine max HOM05D000461 ORTHO05D009042 3.6e-55 219.2 253 51.0
Migut.M00872 Erythranthe guttata HOM05D000461 ORTHO05D009042 6.2e-55 218.4 229 53.3
Sp7g25320 Schrenkiella parvula HOM05D000461 ORTHO05D009042 8.0e-55 218.0 206 55.3
Sed0008890 Sechium edule HOM05D000461 ORTHO05D009042 1.0e-54 217.6 206 57.8
TPR.G32851 Trifolium pratense HOM05D000461 ORTHO05D009042 2.3e-54 216.5 196 56.6
Cc05_g12620 Coffea canephora HOM05D000461 ORTHO05D009042 3.1e-54 216.1 211 56.4
Sopen07g031710 Solanum pennellii HOM05D000461 ORTHO05D009042 3.1e-54 216.1 167 61.7
ClCG10G006570 Citrullus lanatus HOM05D000461 ORTHO05D009042 4.0e-54 215.7 204 57.4
Carub.0007s1348 Capsella rubella HOM05D000461 ORTHO05D009042 5.2e-54 215.3 192 57.8
Rhsim04G0018200 Rhododendron simsii HOM05D000461 ORTHO05D009042 5.2e-54 215.3 263 47.9
Lalb_Chr01g0017011 Lupinus albus HOM05D000461 ORTHO05D009042 1.5e-53 213.8 244 49.2
Gorai.002G075700 Gossypium raimondii HOM05D000461 ORTHO05D009042 2.0e-53 213.4 268 47.4
Sabra16G0267700 Salix brachista HOM05D000461 ORTHO05D009042 2.0e-53 213.4 228 52.6
Gohir.D01G055600 Gossypium hirsutum HOM05D000461 ORTHO05D009042 3.4e-53 212.6 265 46.8
AT4G27390 Arabidopsis thaliana HOM05D000461 ORTHO05D009042 4.4e-53 212.2 192 56.8
THA.LOC104799911 Tarenaya hassleriana HOM05D000461 ORTHO05D009042 1.3e-52 210.7 200 56.0
MD03G1219800 Malus domestica HOM05D000461 ORTHO05D009042 1.7e-52 210.3 146 65.8
Lsat_1_v5_gn_7_106400 Lactuca sativa HOM05D000461 ORTHO05D009042 3.7e-52 209.1 178 57.3
GSVIVG01014422001 Vitis vinifera HOM05D000461 ORTHO05D009042 3.7e-52 209.1 148 63.5
Atru.chr2.2831 Acer truncatum HOM05D000461 ORTHO05D009042 1.9e-51 206.8 184 57.1
Aa31LG5G10130 Aethionema arabicum HOM05D000461 ORTHO05D009042 1.9e-51 206.8 197 53.3
SGA_v2.0_scaffold73G24312 Striga asiatica HOM05D000461 ORTHO05D009042 3.2e-51 206.1 227 49.3
AL7G25410 Arabidopsis lyrata HOM05D000461 ORTHO05D009042 5.4e-51 205.3 194 55.7
EL10Ac4g08079 Beta vulgaris HOM05D000461 ORTHO05D009042 9.2e-51 204.5 321 41.4
Lj3g0027305 Lotus japonicus HOM05D000461 ORTHO05D009042 3.5e-50 202.6 198 55.6
DCAR_013076 Daucus carota HOM05D000461 ORTHO05D009768 3.9e-49 199.1 174 58.6
TAR626G1568 Trochodendron aralioides HOM05D000461 ORTHO05D009042 3.9e-49 199.1 160 60.6
Actinidia18752 Actinidia chinensis HOM05D000461 ORTHO05D009042 6.6e-49 198.4 216 50.9
Aqoxy1G02771 Aquilegia oxysepala HOM05D000461 ORTHO05D009042 6.6e-49 198.4 206 52.4
arahy.Tifrunner.gnm1.ann1.20QRXD Arachis hypogaea HOM05D000461 ORTHO05D009042 6.6e-49 198.4 171 57.9
arahy.Tifrunner.gnm1.ann1.IDBP1F Arachis hypogaea HOM05D000461 ORTHO05D009042 4.3e-48 195.7 172 58.1
Nitab4.5_0002565g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 7.3e-48 194.9 195 52.8
Oeu005436.1 Olea europaea HOM05D000461 ORTHO05D009042 7.3e-48 194.9 125 71.2
Actinidia25643 Actinidia chinensis HOM05D000461 ORTHO05D009042 1.6e-47 193.7 186 55.4
CDE05G1014 Ceratophyllum demersum HOM05D000461 ORTHO05D009042 2.1e-47 193.4 200 51.5
PSO210G3087 Papaver somniferum HOM05D000461 ORTHO05D009042 2.3e-46 189.9 205 50.2
HanXRQChr11g0330871 Helianthus annuus HOM05D000461 ORTHO05D009042 1.4e-43 180.6 176 51.7
PSO832G2223 Papaver somniferum HOM05D000461 ORTHO05D009042 3.2e-43 179.5 205 48.3
AUR62029322 Chenopodium quinoa HOM05D000461 ORTHO05D009042 5.4e-43 178.7 272 44.9
Peaxi162Scf01216g00058 Petunia axillaris HOM05D000461 ORTHO05D009042 3.9e-41 172.6 234 42.7
ECA236G1699 Erigeron canadensis HOM05D003383 ORTHO05D003890 8.6e-41 171.4 142 54.2
vmacro09553 Vaccinium macrocarpon HOM05D000461 ORTHO05D009042 3.3e-40 169.5 352 34.9
FvH4_3g20860 Fragaria vesca HOM05D000461 ORTHO05D009042 9.5e-40 167.9 139 58.3
Actinidia35273 Actinidia chinensis HOM05D000461 ORTHO05D009042 2.0e-37 160.2 209 47.4
Hund28424 Selenicereus undatus HOM05D000461 ORTHO05D009042 5.8e-37 158.7 209 48.8
Hund28429 Selenicereus undatus HOM05D000461 ORTHO05D009042 5.8e-37 158.7 209 48.8
AUR62015609 Chenopodium quinoa HOM05D000461 ORTHO05D009042 1.3e-36 157.5 265 42.3
MELO3C016549.2 Cucumis melo HOM05D000461 ORTHO05D009042 1.6e-34 150.6 139 56.8
HPP92_001809 Vanilla planifolia HOM05D000461 ORTHO05D009042 3.5e-34 149.4 132 53.8
Mapoly0059s0039 Marchantia polymorpha HOM05D000461 ORTHO05D009042 3.9e-33 146.0 166 46.4
Zm00001eb352790 Zea mays HOM05D000461 ORTHO05D009042 6.6e-33 145.2 157 45.2
Os05g0502500 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D009042 1.1e-32 144.4 145 50.3
VMungo1080G0679 Vigna mungo HOM05D000461 ORTHO05D009042 1.5e-32 144.1 169 53.3
CSS0035681 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 5.6e-32 142.1 175 50.3
RcHm_v2.0_Chr5g0035211 Rosa chinensis HOM05D000461 ORTHO05D009042 3.6e-31 139.4 109 57.8
Haze_09518 Corylus avellana HOM05D000461 ORTHO05D009042 5.8e-29 132.1 222 41.0
SMO347G0332 Selaginella moellendorffii HOM05D000461 ORTHO05D009042 2.9e-28 129.8 183 38.3
PGSC0003DMG400019287 Solanum tuberosum HOM05D000461 ORTHO05D009042 3.2e-27 126.3 84 61.9
Hma1.2p1_1003F.1_g246740 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 6.0e-26 122.1 87 64.4
Pp3c5_7600 Physcomitrium patens HOM05D000461 ORTHO05D009042 1.4e-22 110.9 216 35.6
Manes.15G162800 Manihot esculenta HOM05D000461 ORTHO05D009042 1.8e-22 110.5 88 65.9
CBR_g3118 Chara braunii HOM05D000461 ORTHO05D009042 2.6e-21 106.7 151 43.7
ATR0693G207 Amborella trichopoda HOM05D000461 ORTHO05D009042 1.1e-19 101.3 93 55.9
unitig_85.g27405 Utricularia gibba HOM05D000461 ORTHO05D009042 2.9e-12 76.6 142 38.7
FAN25G1192 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.6e-07 60.8 54 59.3
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.4e-06 57.8 51 56.9
MBI18_g11113_MAGBIO Magnolia biondii HOM05D000461 ORTHO05D009042 2.4e-06 57.0 88 39.8


User provided reference genes

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