Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 4.4e-161 571.2 292 100.0
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.3e-61 240.0 302 47.4
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.0e-60 236.9 304 48.0
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.3e-53 213.4 300 44.0
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 2.3e-53 213.4 303 45.9
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 1.1e-50 204.5 302 42.7
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.2e-49 201.1 330 40.9
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 1.2e-46 191.0 336 39.0
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 5.8e-44 182.2 353 38.8
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 2.4e-42 176.8 337 39.5
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 3.5e-41 172.9 324 38.9
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 1.3e-40 171.0 321 36.8
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 1.3e-40 171.0 319 39.2
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 3.0e-40 169.9 329 40.7
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 8.7e-40 168.3 303 39.3
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 1.5e-39 167.5 326 39.9
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.9e-39 167.2 345 36.5
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.6e-39 165.6 344 35.2
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.8e-38 163.3 345 35.4
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 1.1e-37 161.4 324 37.3
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.4e-37 161.0 290 38.6
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 2.4e-37 160.2 293 40.3
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 9.0e-37 158.3 315 36.8
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 1.2e-36 157.9 322 37.0
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.5e-36 157.5 338 35.8
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.0e-36 157.1 331 35.6
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 2.6e-36 156.8 331 35.3
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.6e-36 156.8 315 36.8
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.8e-36 155.6 332 33.4
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 9.9e-36 154.8 340 35.0
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.9e-35 153.3 326 34.4
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 4.9e-35 152.5 335 34.6
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 6.4e-35 152.1 322 36.3
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.1e-34 151.4 309 37.9
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 5.4e-34 149.1 329 37.1
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 5.4e-34 149.1 318 35.8
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 5.4e-34 149.1 322 32.9
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 5.4e-34 149.1 322 34.8
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 9.3e-34 148.3 332 34.6
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 9.3e-34 148.3 311 33.4
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.2e-33 147.9 317 36.9
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.6e-33 147.5 323 34.1
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.6e-33 147.5 336 33.9
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 2.7e-33 146.7 334 36.8
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 3.5e-33 146.4 335 35.5
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 4.6e-33 146.0 326 35.3
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.9e-33 145.2 319 35.7
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.0e-32 144.8 322 33.9
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.0e-32 144.8 322 33.9
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.0e-32 144.8 329 35.3
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 1.0e-32 144.8 324 32.4
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 1.0e-32 144.8 334 32.3
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 1.0e-32 144.8 324 35.8
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 1.3e-32 144.4 313 34.2
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 1.8e-32 144.1 209 44.0
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 2.3e-32 143.7 332 32.2
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.0e-32 143.3 291 37.5
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 5.1e-32 142.5 316 34.2
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 5.1e-32 142.5 293 34.5
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 6.7e-32 142.1 318 34.6
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 6.7e-32 142.1 327 34.9
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 6.7e-32 142.1 345 32.5
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.7e-32 141.7 318 34.9
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 8.7e-32 141.7 316 33.9
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 1.1e-31 141.4 300 37.3
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.9e-31 140.6 319 35.1
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.9e-31 140.6 318 34.9
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 2.5e-31 140.2 310 34.2
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 2.5e-31 140.2 320 37.2
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 3.3e-31 139.8 342 33.6
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 3.3e-31 139.8 309 35.3
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 4.3e-31 139.4 304 36.2
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 4.3e-31 139.4 326 34.4
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 9.6e-31 138.3 319 34.5
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 2.1e-30 137.1 325 34.5
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 4.8e-30 136.0 331 36.9
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 4.8e-30 136.0 324 33.0
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 1.1e-29 134.8 293 37.5
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-29 134.8 319 33.9
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.4e-29 133.7 317 34.4
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 2.4e-29 133.7 323 36.5
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 3.1e-29 133.3 322 34.2
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 4.0e-29 132.9 314 33.4
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 4.0e-29 132.9 319 33.9
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 6.9e-29 132.1 319 32.6
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.0e-29 131.7 319 36.1
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.2e-28 131.3 319 34.2
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 1.2e-28 131.3 314 34.1
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 3.4e-28 129.8 310 33.2
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 3.4e-28 129.8 304 33.9
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 4.5e-28 129.4 310 34.8
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 5.8e-28 129.0 471 28.5
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 2.2e-27 127.1 305 33.4
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 2.2e-27 127.1 327 33.9
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 2.2e-27 127.1 319 32.0
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 2.9e-27 126.7 311 32.8
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 3.8e-27 126.3 310 33.5
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 3.8e-27 126.3 325 33.8
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 4.9e-27 125.9 316 32.9
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.4e-27 125.2 313 35.5
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.1e-26 124.8 337 31.5
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.4e-26 124.4 310 32.6
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 1.4e-26 124.4 311 33.4
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 1.9e-26 124.0 317 34.1
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 3.2e-26 123.2 306 33.7
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 3.2e-26 123.2 306 32.0
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.2e-26 123.2 323 35.0
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 5.5e-26 122.5 307 33.6
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 5.5e-26 122.5 321 34.6
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 5.5e-26 122.5 320 30.6
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 1.6e-25 120.9 316 31.6
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 1.6e-25 120.9 340 32.4
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 1.6e-25 120.9 317 32.2
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 2.1e-25 120.6 310 32.9
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 2.1e-25 120.6 325 33.8
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.1e-25 120.6 323 31.6
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 2.7e-25 120.2 326 33.4
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 3.0e-24 116.7 311 32.2
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 5.1e-24 115.9 307 33.2
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 6.7e-24 115.5 214 38.3
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 1.1e-23 114.8 318 33.0
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.5e-23 113.6 306 34.3
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 9.6e-23 111.7 351 30.5
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 2.8e-22 110.2 325 34.2
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 6.2e-22 109.0 292 33.2
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 1.4e-21 107.8 321 30.5
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 1.8e-21 107.5 299 30.8
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 3.1e-21 106.7 332 29.5
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 4.0e-21 106.3 266 33.1
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 5.3e-21 105.9 327 33.3
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.2e-20 104.8 310 30.0
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 1.5e-20 104.4 281 33.1
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 1.5e-20 104.4 226 34.5
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 2.2e-19 100.5 289 28.7
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 1.9e-18 97.4 322 30.1
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 2.5e-18 97.1 296 30.7
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.2e-17 94.7 270 33.7
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 3.0e-16 90.1 332 28.6
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 1.1e-15 88.2 313 29.4
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.5e-15 87.8 230 28.7
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 2.5e-15 87.0 331 27.2
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 8.2e-14 82.0 203 33.0
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.2e-12 78.2 128 38.3
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.5e-12 77.8 187 37.4
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 5.9e-12 75.9 252 29.4
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 7.6e-12 75.5 264 31.1
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.6e-12 75.5 251 29.1
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 7.6e-12 75.5 157 36.9
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.3e-11 74.7 117 42.7
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 5.0e-11 72.8 159 30.8
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 6.5e-11 72.4 205 34.1
Peaxi162Scf00271g00833 Petunia axillaris HOM05D002766 ORTHO05D002809 6.5e-11 72.4 258 28.7
MBI04_g09526_MAGBIO Magnolia biondii HOM05D002766 ORTHO05D002809 8.5e-11 72.0 324 27.2
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-10 71.6 256 28.1
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.9e-10 70.9 342 25.4
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 1.9e-10 70.9 191 28.8
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 2.5e-10 70.5 217 30.9
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 3.2e-10 70.1 192 32.3
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 1.3e-08 64.7 121 39.7
QL02p025713 Quercus lobata HOM05D002766 ORTHO05D002809 1.3e-08 64.7 225 27.1
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 3.9e-08 63.2 363 24.8
Cfa012925 Carpinus fangiana HOM05D002766 ORTHO05D002809 1.1e-07 61.6 219 27.9
Hund11508 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.9e-07 60.8 91 38.5
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 2.5e-07 60.5 275 26.5
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 3.3e-07 60.1 296 24.7
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 1.3e-06 58.2 149 30.2
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.6e-06 57.8 203 26.1
DCAR_018118 Daucus carota HOM05D002766 ORTHO05D002809 2.2e-06 57.4 252 24.6
Nitab4.5_0001358g0090 Nicotiana tabacum HOM05D002766 ORTHO05D002809 2.2e-06 57.4 230 27.8
Sopen03g024140 Solanum pennellii HOM05D002766 ORTHO05D002809 2.8e-06 57.0 228 27.6
TWI23G0718 Tripterygium wilfordii HOM05D002766 ORTHO05D002809 2.8e-06 57.0 251 25.1
Hma1.2p1_0432F.1_g151920 Hydrangea macrophylla HOM05D002766 ORTHO05D002809 4.8e-06 56.2 228 26.3
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 4.8e-06 56.2 321 23.7
PGSC0003DMG400018857 Solanum tuberosum HOM05D002766 ORTHO05D002809 4.8e-06 56.2 229 27.1
Oeu017784.1 Olea europaea HOM05D002766 ORTHO05D002809 8.2e-06 55.5 227 29.1
Hund11841 Selenicereus undatus HOM05D002766 ORTHO05D002809 8.2e-06 55.5 241 24.1
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 8.2e-06 55.5 145 29.0


User provided reference genes

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