Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 4.0e-182 641.3 331 100.0
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 1.1e-110 404.1 348 65.8
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 2.2e-108 396.4 341 62.2
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 8.4e-108 394.4 346 63.0
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 2.5e-107 392.9 345 59.4
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 4.2e-107 392.1 345 59.7
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.1e-106 389.8 349 63.0
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 3.9e-105 385.6 340 62.6
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 1.1e-104 384.0 344 61.6
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 1.5e-104 383.6 344 61.6
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 1.5e-104 383.6 345 60.6
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 1.9e-104 383.3 345 60.6
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 2.5e-104 382.9 344 59.0
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 1.3e-103 380.6 333 60.7
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.3e-103 380.6 340 61.5
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 2.1e-103 379.8 341 59.5
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 2.8e-103 379.4 283 70.3
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 3.7e-103 379.0 339 61.1
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 6.3e-103 378.3 345 58.0
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 8.2e-103 377.9 343 61.8
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 2.4e-102 376.3 343 61.8
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 1.2e-101 374.0 343 59.8
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 5.9e-101 371.7 350 59.1
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 5.9e-101 371.7 333 61.6
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 1.9e-99 366.7 329 61.1
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 5.5e-99 365.2 317 61.8
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 1.2e-98 364.0 281 65.1
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 1.6e-98 363.6 346 58.7
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 2.7e-98 362.8 340 57.9
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 4.6e-98 362.1 339 59.6
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 6.1e-98 361.7 332 59.0
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 6.1e-98 361.7 279 66.7
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 2.3e-97 359.8 333 58.9
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 2.3e-97 359.8 332 59.0
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 2.3e-97 359.8 342 55.6
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 8.7e-97 357.8 332 58.7
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 1.1e-96 357.5 311 60.8
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.9e-96 356.7 293 63.5
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 1.9e-96 356.7 348 58.9
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 4.3e-96 355.5 340 59.1
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 7.4e-96 354.8 341 54.8
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 1.6e-95 353.6 313 61.7
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 2.2e-95 353.2 340 58.5
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 2.2e-95 353.2 315 61.3
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 2.2e-95 353.2 340 58.2
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 3.7e-95 352.4 343 54.5
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 3.7e-95 352.4 298 61.4
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 6.3e-95 351.7 342 55.8
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 8.2e-95 351.3 345 55.7
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 8.2e-95 351.3 315 59.0
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 8.2e-95 351.3 336 57.7
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 1.1e-94 350.9 312 59.9
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 1.4e-94 350.5 340 57.6
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 3.1e-94 349.4 321 58.6
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 5.3e-94 348.6 342 56.1
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 1.5e-93 347.1 299 60.5
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 2.6e-93 346.3 311 60.5
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 1.7e-92 343.6 341 55.4
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 1.7e-92 343.6 341 55.4
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 3.8e-92 342.4 341 56.9
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 1.1e-91 340.9 346 56.9
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 1.6e-90 337.0 327 56.6
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 2.7e-90 336.3 343 56.0
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 2.3e-89 333.2 276 61.2
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 2.5e-88 329.7 319 58.9
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 1.3e-87 327.4 275 63.6
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 1.1e-86 324.3 317 58.4
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 1.1e-86 324.3 334 55.1
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 2.1e-82 310.1 304 55.9
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 1.8e-81 307.0 281 54.8
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 3.9e-81 305.8 290 59.7
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 3.9e-81 305.8 310 53.9
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 5.1e-81 305.4 344 53.2
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 6.7e-81 305.1 345 54.2
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 3.3e-80 302.8 350 53.7
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 7.4e-80 301.6 345 54.2
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 9.7e-80 301.2 334 51.2
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 1.1e-78 297.7 338 51.5
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 1.4e-78 297.4 322 55.6
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 1.8e-78 297.0 316 55.7
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 1.8e-78 297.0 316 55.7
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 7.0e-78 295.0 325 56.0
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 2.0e-77 293.5 325 55.4
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 2.0e-77 293.5 328 52.7
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 8.5e-76 288.1 288 57.6
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 8.8e-73 278.1 328 48.8
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 8.8e-73 278.1 323 53.9
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 2.5e-67 260.0 329 49.5
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 4.0e-65 252.7 206 62.6
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 6.1e-58 228.8 280 46.8
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 4.0e-57 226.1 298 47.3
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 5.2e-57 225.7 185 61.1
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 8.9e-49 198.4 278 39.9
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 1.5e-48 197.6 133 70.7
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 1.3e-44 184.5 229 48.9
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.4e-41 174.5 121 67.8
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 5.8e-32 142.5 267 34.5
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 2.9e-31 140.2 269 33.8
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 3.3e-27 126.7 268 37.3
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 6.8e-25 119.0 230 39.6
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 2.0e-24 117.5 136 49.3
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 3.2e-22 110.2 116 52.6
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 2.5e-19 100.5 258 27.9
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 9.6e-19 98.6 116 49.1
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 3.5e-13 80.1 286 23.8
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 2.1e-10 70.9 235 26.8
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 2.8e-10 70.5 100 41.0


User provided reference genes

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