Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.6e-128 463.0 274 100.0
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 6.7e-18 95.5 105 47.6
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.2e-16 90.5 102 45.1
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.2e-16 90.5 102 45.1
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 4.8e-16 89.4 102 45.1
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 6.3e-16 89.0 102 45.1
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 1.4e-15 87.8 102 46.1
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.8e-15 87.4 102 45.1
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.4e-15 87.0 102 45.1
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 3.1e-15 86.7 102 42.2
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 4.1e-15 86.3 102 44.1
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 5.3e-15 85.9 102 43.1
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 5.3e-15 85.9 102 43.1
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 5.3e-15 85.9 97 42.3
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 6.9e-15 85.5 102 43.1
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 1.2e-14 84.7 105 41.9
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 1.5e-14 84.3 102 42.2
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 1.5e-14 84.3 102 43.1
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.0e-14 84.0 102 43.1
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 2.0e-14 84.0 102 41.2
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 2.6e-14 83.6 102 42.2
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 2.6e-14 83.6 97 41.2
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 2.6e-14 83.6 102 43.1
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 3.4e-14 83.2 102 43.1
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 3.4e-14 83.2 102 41.2
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 3.4e-14 83.2 102 41.2
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 4.5e-14 82.8 102 43.1
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 4.5e-14 82.8 102 42.2
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 4.5e-14 82.8 101 41.6
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 5.9e-14 82.4 102 42.2
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 1.0e-13 81.6 102 41.2
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 1.0e-13 81.6 102 42.2
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 1.0e-13 81.6 102 42.2
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 1.3e-13 81.3 97 42.3
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 1.3e-13 81.3 102 41.2
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 1.3e-13 81.3 102 41.2
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 2.2e-13 80.5 102 41.2
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 2.2e-13 80.5 106 41.5
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 2.2e-13 80.5 102 44.1
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 2.9e-13 80.1 102 40.2
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 2.9e-13 80.1 102 42.2
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 2.9e-13 80.1 94 42.6
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 3.8e-13 79.7 102 40.2
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 3.8e-13 79.7 102 41.2
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 5.0e-13 79.3 102 38.2
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 5.0e-13 79.3 92 41.3
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 5.0e-13 79.3 93 43.0
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 1.1e-12 78.2 94 39.4
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.1e-12 78.2 106 40.6
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.1e-12 78.2 106 40.6
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 1.1e-12 78.2 102 39.2
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 1.4e-12 77.8 102 41.2
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 1.4e-12 77.8 102 41.2
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 1.4e-12 77.8 106 39.6
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.4e-12 77.8 106 40.6
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.4e-12 77.8 105 41.0
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.4e-12 77.8 105 41.0
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 1.4e-12 77.8 102 39.2
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 1.4e-12 77.8 102 41.2
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 2.5e-12 77.0 102 37.3
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 2.5e-12 77.0 102 38.2
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 2.5e-12 77.0 93 39.8
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 3.2e-12 76.6 102 39.2
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 3.2e-12 76.6 94 39.4
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 4.2e-12 76.3 102 37.3
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 7.2e-12 75.5 102 38.2
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 7.2e-12 75.5 102 37.3
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 9.4e-12 75.1 92 35.9
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 1.2e-11 74.7 102 36.3
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 1.6e-11 74.3 94 37.2
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 1.6e-11 74.3 102 37.3
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 1.6e-11 74.3 102 37.3
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 1.6e-11 74.3 104 38.5
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.1e-11 73.9 94 38.3
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 2.7e-11 73.6 94 39.4
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 4.7e-11 72.8 102 38.2
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 6.1e-11 72.4 94 37.2
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 6.1e-11 72.4 107 38.3
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 6.1e-11 72.4 94 38.3
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 1.4e-10 71.2 95 41.1
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 1.4e-10 71.2 103 36.9
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 3.0e-10 70.1 94 36.2
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 3.0e-10 70.1 94 36.2
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 3.0e-10 70.1 94 36.2
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 3.0e-10 70.1 94 36.2
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 3.0e-10 70.1 94 36.2
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 3.0e-10 70.1 94 36.2
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 3.0e-10 70.1 94 36.2
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 3.9e-10 69.7 94 36.2
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 6.7e-10 68.9 94 35.1
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 6.7e-10 68.9 94 35.1
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 6.7e-10 68.9 94 35.1
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 4.4e-09 66.2 91 33.0
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 4.4e-09 66.2 103 34.0
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 5.7e-09 65.9 103 32.0
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 1.7e-08 64.3 92 32.6


User provided reference genes

Program Settings