Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.0e-210 736.5 382 100.0
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.8e-178 629.4 386 83.4
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.2e-176 622.5 382 82.7
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 2.1e-174 615.9 386 81.6
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 3.9e-173 611.7 388 82.2
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 1.1e-172 610.1 380 81.8
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 5.6e-172 607.8 386 81.9
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.6e-171 605.1 382 80.9
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 2.4e-170 602.4 386 80.3
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 2.4e-170 602.4 380 81.3
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.2e-169 600.1 388 80.4
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 3.8e-168 595.1 386 80.3
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 1.6e-166 589.7 380 80.3
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 2.1e-166 589.3 382 78.0
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.7e-166 589.0 382 79.6
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 3.5e-166 588.6 386 79.0
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.0e-165 587.0 386 79.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 1.7e-165 586.3 384 79.4
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 5.1e-165 584.7 382 76.7
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 6.6e-165 584.3 388 78.1
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 1.1e-164 583.6 381 78.5
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 2.5e-164 582.4 386 77.7
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 3.3e-164 582.0 386 76.7
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 5.6e-164 581.3 400 76.8
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 5.6e-164 581.3 381 78.0
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 7.3e-164 580.9 384 77.6
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 3.6e-163 578.6 402 74.9
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.1e-162 577.0 379 79.7
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 5.3e-162 574.7 386 76.2
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.5e-161 573.2 380 77.9
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 5.8e-161 571.2 383 76.0
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 9.9e-161 570.5 382 78.5
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.3e-160 570.1 376 77.4
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.3e-160 570.1 386 76.4
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.7e-160 569.7 382 77.5
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.9e-160 568.9 382 77.0
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 6.4e-160 567.8 374 78.3
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.9e-159 566.2 385 74.8
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 3.2e-159 565.5 385 76.1
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 9.3e-159 563.9 385 76.1
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 9.3e-159 563.9 384 75.5
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 9.3e-159 563.9 383 75.2
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 2.1e-158 562.8 373 79.9
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 2.1e-158 562.8 373 79.9
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 2.1e-158 562.8 373 79.9
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 2.7e-158 562.4 383 74.9
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 4.6e-158 561.6 389 74.6
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.0e-158 561.2 386 75.9
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 6.0e-158 561.2 420 71.4
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 7.8e-158 560.8 373 79.6
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 7.8e-158 560.8 373 79.6
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.3e-157 559.3 376 79.3
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 3.0e-157 558.9 385 75.3
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 5.1e-157 558.1 385 74.3
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 1.1e-156 557.0 383 73.9
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 7.3e-156 554.3 380 74.2
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 9.6e-156 553.9 373 78.6
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.3e-155 553.5 386 76.9
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 2.1e-155 552.7 379 77.3
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 2.1e-155 552.7 380 74.7
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 3.6e-155 552.0 389 74.3
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 4.8e-155 551.6 375 78.1
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.4e-154 550.1 375 78.1
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 6.9e-154 547.7 375 77.6
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 6.9e-154 547.7 377 73.2
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 9.0e-154 547.4 375 78.4
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.2e-153 547.0 374 75.9
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 5.8e-153 544.7 376 76.1
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 7.6e-153 544.3 386 73.6
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.3e-152 543.5 380 74.5
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 2.2e-152 542.7 382 74.9
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 2.2e-152 542.7 380 74.7
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 2.9e-152 542.3 428 69.2
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 3.8e-152 542.0 375 77.3
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 3.8e-152 542.0 382 74.6
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 8.4e-152 540.8 384 74.0
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.1e-151 540.4 385 76.1
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.9e-151 539.7 380 73.9
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 5.4e-151 538.1 384 72.4
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 7.1e-151 537.7 401 72.6
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 7.1e-151 537.7 380 73.7
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 9.3e-151 537.3 377 71.9
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 2.7e-150 535.8 372 76.6
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 3.5e-150 535.4 373 77.2
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 3.5e-150 535.4 388 72.7
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.8e-149 533.1 386 73.1
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 2.3e-149 532.7 374 76.7
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 6.7e-149 531.2 395 71.6
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 1.5e-148 530.0 386 72.3
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 3.3e-148 528.9 386 72.8
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 4.8e-147 525.0 374 76.5
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.0e-145 519.6 356 75.0
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.6e-145 519.2 379 70.2
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.6e-145 519.2 376 72.9
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 4.5e-145 518.5 375 74.4
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.1e-143 513.8 420 66.2
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 1.1e-143 513.8 377 70.0
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 1.4e-143 513.5 382 70.4
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 2.5e-143 512.7 453 61.1
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.5e-142 508.8 378 70.6
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 6.7e-141 504.6 369 72.4
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 4.8e-139 498.4 387 69.0
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.5e-137 493.4 384 70.1
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 2.6e-137 492.7 387 71.3
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 6.5e-136 488.0 428 63.8
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 2.7e-134 482.6 483 58.8
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 7.9e-134 481.1 370 68.1
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 2.4e-130 469.5 324 75.3
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 1.2e-129 467.2 394 66.0
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 3.8e-128 462.2 382 65.4
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.4e-127 460.3 384 63.3
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 4.6e-126 455.3 336 72.9
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 7.9e-126 454.5 380 67.6
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 2.3e-125 453.0 442 60.2
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 9.7e-124 447.6 382 65.2
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 2.2e-123 446.4 382 63.4
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.4e-121 439.1 330 71.8
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.4e-117 427.2 383 59.5
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 3.7e-115 419.1 378 59.5
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.5e-113 413.7 381 60.1
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.2e-111 406.0 363 61.4
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 1.3e-107 394.0 382 58.1
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.1e-106 391.0 293 69.6
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 3.1e-106 389.4 385 56.1
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.0e-105 386.7 382 58.4
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.2e-96 356.7 388 52.1
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.7e-91 340.5 319 59.9
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 2.1e-65 253.8 374 39.8
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 5.6e-55 219.2 169 65.1
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 6.4e-51 205.7 386 36.8
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 4.8e-30 136.3 84 79.8
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 6.5e-27 125.9 174 45.4
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.9e-18 97.8 46 97.8
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.9e-18 97.8 46 97.8
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 3.9e-16 90.1 55 76.4
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 6.1e-09 66.2 53 67.9
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 1.3e-06 58.5 121 38.0


User provided reference genes

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