Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 2.4e-220 768.8 481 100.0
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 1.5e-25 121.7 250 44.4
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 1.5e-25 121.7 323 35.9
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 1.3e-24 118.6 216 44.0
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.4e-23 115.2 316 34.8
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.9e-23 114.8 200 45.0
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 2.4e-23 114.4 287 36.9
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 2.4e-23 114.4 473 29.8
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 3.2e-23 114.0 567 26.8
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 4.2e-23 113.6 257 38.1
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 7.1e-23 112.8 198 42.9
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 9.3e-23 112.5 281 37.0
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.1e-22 111.3 212 39.6
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 1.3e-21 108.6 278 38.8
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 1.3e-21 108.6 282 40.1
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 6.7e-21 106.3 199 41.7
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 6.7e-21 106.3 295 38.0
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.9e-20 104.8 489 33.1
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.5e-20 104.4 225 44.0
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 2.5e-20 104.4 206 46.1
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.3e-20 104.0 199 41.7
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 1.3e-19 102.1 201 45.3
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.6e-19 101.7 199 40.7
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 2.1e-19 101.3 219 42.9
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.1e-19 101.3 514 26.8
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.8e-19 100.9 249 35.3
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 2.8e-19 100.9 508 27.0
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 4.8e-19 100.1 199 40.7
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 6.2e-19 99.8 290 35.9
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 8.1e-19 99.4 283 35.7
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-18 99.0 228 36.4
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 6.9e-18 96.3 63 77.8
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 9.0e-18 95.9 214 37.9
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 9.0e-18 95.9 249 34.5
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 9.0e-18 95.9 200 44.0
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 9.0e-18 95.9 268 37.7
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 9.0e-18 95.9 200 38.5
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-17 95.1 242 36.0
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.5e-17 95.1 214 40.7
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 2.0e-17 94.7 274 35.8
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 2.6e-17 94.4 237 35.9
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 2.6e-17 94.4 237 35.9
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.6e-17 94.4 249 33.7
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 2.6e-17 94.4 198 40.4
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 3.4e-17 94.0 274 35.0
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 3.4e-17 94.0 274 35.0
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 7.6e-17 92.8 241 35.3
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 7.6e-17 92.8 202 39.6
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 7.6e-17 92.8 268 34.7
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 7.6e-17 92.8 272 34.6
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-16 91.7 244 33.6
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.7e-16 91.7 313 32.6
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.7e-16 91.7 287 33.4
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.9e-16 90.9 261 33.0
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 3.8e-16 90.5 211 39.3
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 4.9e-16 90.1 207 40.6
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 4.9e-16 90.1 193 43.0
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 8.4e-16 89.4 183 40.4
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.1e-15 89.0 215 36.3
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.1e-15 89.0 198 40.4
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 1.4e-15 88.6 215 36.3
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.4e-15 88.6 213 39.0
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.4e-15 88.6 206 38.3
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.9e-15 88.2 301 31.2
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 2.5e-15 87.8 482 24.5
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 4.2e-15 87.0 202 38.1
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 5.5e-15 86.7 191 45.0
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 5.5e-15 86.7 213 35.2
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 5.5e-15 86.7 210 33.8
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 7.1e-15 86.3 274 32.8
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 1.6e-14 85.1 302 32.5
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 3.5e-14 84.0 198 37.9
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.5e-14 84.0 87 59.8
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 4.6e-14 83.6 302 30.8
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 4.6e-14 83.6 237 32.9
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 7.9e-14 82.8 61 67.2
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 7.9e-14 82.8 61 67.2
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 7.9e-14 82.8 227 36.6
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 1.0e-13 82.4 237 33.8
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 1.0e-13 82.4 187 41.7
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-13 82.0 56 71.4
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-13 82.0 56 71.4
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 3.9e-13 80.5 205 37.6
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 5.1e-13 80.1 209 37.3
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 6.7e-13 79.7 196 37.8
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 8.7e-13 79.3 323 31.9
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 8.7e-13 79.3 266 30.5
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.1e-12 79.0 243 37.0
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.1e-12 79.0 214 35.5
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.9e-12 78.2 52 73.1
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.9e-12 78.2 193 37.3
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 2.5e-12 77.8 208 36.5
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 2.5e-12 77.8 213 33.8
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 3.3e-12 77.4 58 67.2
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 7.4e-12 76.3 250 32.0
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 7.4e-12 76.3 201 38.3
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 9.6e-12 75.9 227 35.2
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 9.6e-12 75.9 65 64.6
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-11 75.5 214 36.0
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 1.3e-11 75.5 203 34.0
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.3e-11 75.5 61 67.2
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 1.6e-11 75.1 198 36.4
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 2.1e-11 74.7 223 35.4
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.1e-11 74.7 200 36.5
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 2.1e-11 74.7 194 35.1
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 2.8e-11 74.3 190 36.3
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 3.7e-11 73.9 197 34.5
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 4.8e-11 73.6 190 36.3
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 6.3e-11 73.2 199 35.2
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 8.2e-11 72.8 197 35.0
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 8.2e-11 72.8 206 33.5
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-10 72.4 197 33.5
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-10 72.4 60 63.3
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-10 72.4 197 33.5
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.1e-10 72.4 216 32.9
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.4e-10 72.0 197 33.5
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.4e-10 72.0 234 32.5
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.4e-10 72.0 272 29.8
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.4e-10 72.0 193 34.7
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.8e-10 71.6 193 42.0
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.4e-10 71.2 208 33.7
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.4e-10 71.2 215 30.2
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 2.4e-10 71.2 199 34.7
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.1e-10 70.9 209 36.4
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 3.1e-10 70.9 206 36.4
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 3.1e-10 70.9 210 32.9
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 4.1e-10 70.5 197 34.5
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 5.3e-10 70.1 283 29.0
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 6.9e-10 69.7 206 32.5
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 1.5e-09 68.6 199 33.2
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-09 67.8 204 33.3
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 2.6e-09 67.8 246 31.7
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 3.4e-09 67.4 191 40.3
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 4.5e-09 67.0 193 37.3
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 7.6e-09 66.2 249 31.3
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 7.6e-09 66.2 56 62.5
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 1.0e-08 65.9 56 60.7
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.7e-08 65.1 194 32.5
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 2.2e-08 64.7 249 30.9
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.2e-08 64.7 193 36.8
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 2.9e-08 64.3 62 58.1
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 5.0e-08 63.5 61 57.4
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 6.5e-08 63.2 192 32.3
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 8.4e-08 62.8 249 30.9
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 1.1e-07 62.4 198 37.9
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.1e-07 62.4 199 31.7
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.4e-07 62.0 201 34.3
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.9e-07 61.6 201 34.3
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 3.2e-07 60.8 249 30.9
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 4.2e-07 60.5 204 31.4
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 9.3e-07 59.3 192 34.9
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 1.2e-06 58.9 59 55.9
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.6e-06 58.5 193 34.2
Os03g0661500 Oryza sativa ssp. japonica HOM05D023203 ORTHO05D025996 2.7e-06 57.8 60 58.3


User provided reference genes

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