Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007920 Simmondsia chinensis HOM05D007055 ORTHO05D008943 2.8e-83 312.0 166 100.0
arahy.Tifrunner.gnm1.ann1.4D1XNM Arachis hypogaea HOM05D007055 ORTHO05D008943 6.9e-34 147.9 116 69.0
arahy.Tifrunner.gnm1.ann1.FS1PG6 Arachis hypogaea HOM05D007055 ORTHO05D008943 1.5e-33 146.7 115 68.7
Glyma.08G173000 Glycine max HOM05D007055 ORTHO05D008943 1.5e-33 146.7 121 67.8
Phvul.005G056000 Phaseolus vulgaris HOM05D007055 ORTHO05D008943 7.6e-33 144.4 119 67.2
Psat1g002720 Pisum sativum HOM05D007055 ORTHO05D008943 1.0e-32 144.1 125 64.8
Lj3g0013500 Lotus japonicus HOM05D007055 ORTHO05D008943 2.2e-32 142.9 124 63.7
Cfa019436 Carpinus fangiana HOM05D007055 ORTHO05D008943 2.9e-32 142.5 159 57.9
Glyma.15G254500 Glycine max HOM05D007055 ORTHO05D008943 2.9e-32 142.5 121 66.1
CSS0027098 Camellia sinensis var. sinensis HOM05D007055 ORTHO05D008943 3.8e-32 142.1 131 61.1
PSO675G8693 Papaver somniferum HOM05D007055 ORTHO05D008943 3.8e-32 142.1 128 60.2
PSO541G2194 Papaver somniferum HOM05D007055 ORTHO05D008943 8.4e-32 141.0 138 58.0
Ca_03690_v3 Cicer arietinum L. HOM05D007055 ORTHO05D008943 1.1e-31 140.6 125 63.2
PGR031G2131 Punica granatum HOM05D007055 ORTHO05D008943 1.9e-31 139.8 122 64.8
Hund02291 Selenicereus undatus HOM05D007055 ORTHO05D008943 2.5e-31 139.4 160 52.5
Aqoxy1G01599 Aquilegia oxysepala HOM05D007055 ORTHO05D008943 3.2e-31 139.0 104 70.2
Thecc.09G245700 Theobroma cacao HOM05D007055 ORTHO05D008943 4.2e-31 138.7 137 58.4
Actinidia07345 Actinidia chinensis HOM05D007055 ORTHO05D008943 7.1e-31 137.9 120 62.5
Medtr2g069750 Medicago truncatula HOM05D007055 ORTHO05D008943 9.3e-31 137.5 123 64.2
Potri.011G144400 Populus trichocarpa HOM05D007055 ORTHO05D008943 1.2e-30 137.1 138 58.7
CiPaw.12G045200 Carya illinoinensis HOM05D007055 ORTHO05D008943 1.6e-30 136.7 148 56.8
Lalb_Chr25g0285111 Lupinus albus HOM05D007055 ORTHO05D008943 2.1e-30 136.3 132 57.6
Sabra11G0128800 Salix brachista HOM05D007055 ORTHO05D008943 4.6e-30 135.2 95 75.8
Lj5A202T45 Lonicera japonica HOM05D007055 ORTHO05D008943 6.0e-30 134.8 95 70.5
ECA240G0655 Erigeron canadensis HOM05D007055 ORTHO05D008943 1.0e-29 134.0 122 59.0
Potri.008G043200 Populus trichocarpa HOM05D007055 ORTHO05D008943 1.0e-29 134.0 130 60.0
Gohir.D05G076400 Gossypium hirsutum HOM05D007055 ORTHO05D008943 1.3e-29 133.7 140 57.9
Rhsim06G0238300 Rhododendron simsii HOM05D007055 ORTHO05D008943 1.3e-29 133.7 164 52.4
PGSC0003DMG400022130 Solanum tuberosum HOM05D007055 ORTHO05D008943 1.3e-29 133.7 125 57.6
AT1G79070 Arabidopsis thaliana HOM05D007055 ORTHO05D008943 1.8e-29 133.3 126 61.1
Sopen07g034550 Solanum pennellii HOM05D007055 ORTHO05D008943 1.8e-29 133.3 118 61.0
Gohir.A05G073500 Gossypium hirsutum HOM05D007055 ORTHO05D008943 2.3e-29 132.9 162 53.1
Manes.06G171200 Manihot esculenta HOM05D007055 ORTHO05D008943 2.3e-29 132.9 123 63.4
Solyc07g066370.3 Solanum lycopersicum HOM05D007055 ORTHO05D008943 2.3e-29 132.9 118 61.9
Ah.06g187070 Amaranthus hybridus HOM05D007055 ORTHO05D008943 3.0e-29 132.5 100 70.0
COL.COLO4_07385 Corchorus olitorius HOM05D007055 ORTHO05D008943 3.0e-29 132.5 129 62.0
Hma1.2p1_0151F.1_g066890 Hydrangea macrophylla HOM05D007055 ORTHO05D008943 3.9e-29 132.1 113 66.4
Ciclev10022701m.g Citrus clementina HOM05D007055 ORTHO05D008943 5.1e-29 131.7 122 63.1
CANSAT56G2639 Cannabis sativa HOM05D007055 ORTHO05D008943 6.7e-29 131.3 139 56.1
CARHR072740 Cardamine hirsuta HOM05D007055 ORTHO05D008943 6.7e-29 131.3 115 63.5
Duzib168G0293 Durio zibethinus HOM05D007055 ORTHO05D008943 8.7e-29 131.0 121 60.3
Lsat_1_v5_gn_7_72120 Lactuca sativa HOM05D007055 ORTHO05D008943 8.7e-29 131.0 120 60.0
Thhalv10019307m.g Eutrema salsugineum HOM05D007055 ORTHO05D008943 1.5e-28 130.2 97 70.1
Gorai.009G077700 Gossypium raimondii HOM05D007055 ORTHO05D008943 1.5e-28 130.2 126 59.5
FvH4_3g16000 Fragaria vesca HOM05D007055 ORTHO05D008943 1.9e-28 129.8 120 58.3
FAN11G2295 Fragaria x ananassa HOM05D007055 ORTHO05D008943 1.9e-28 129.8 120 58.3
SalBow5G4782 Salvia bowleyana HOM05D000091 ORTHO05D003024 1.9e-28 129.8 116 58.6
FAN21G0096 Fragaria x ananassa HOM05D007055 ORTHO05D008943 2.5e-28 129.4 120 58.3
RcHm_v2.0_Chr5g0026941 Rosa chinensis HOM05D007055 ORTHO05D008943 2.5e-28 129.4 98 67.3
AL2G39530 Arabidopsis lyrata HOM05D007055 ORTHO05D008943 3.3e-28 129.0 123 59.3
EL10Ac4g08563 Beta vulgaris HOM05D007055 ORTHO05D008943 4.3e-28 128.6 114 64.9
DCAR_013747 Daucus carota HOM05D007055 ORTHO05D008943 4.3e-28 128.6 143 54.5
Nn7g37868 Nelumbo nucifera HOM05D007055 ORTHO05D008943 4.3e-28 128.6 120 61.7
Peaxi162Scf00232g01121 Petunia axillaris HOM05D007055 ORTHO05D008943 5.7e-28 128.3 125 53.6
FAN21G3903 Fragaria x ananassa HOM05D007055 ORTHO05D008943 7.4e-28 127.9 120 57.5
FAN16G3461 Fragaria x ananassa HOM05D007055 ORTHO05D008943 1.3e-27 127.1 125 55.2
Sp5g34120 Schrenkiella parvula HOM05D007055 ORTHO05D008943 1.3e-27 127.1 117 60.7
TWI38G0074 Tripterygium wilfordii HOM05D007055 ORTHO05D008943 1.6e-27 126.7 148 53.4
GSVIVG01020441001 Vitis vinifera HOM05D007055 ORTHO05D008943 1.6e-27 126.7 98 71.4
Manes.06G170801 Manihot esculenta HOM05D007055 ORTHO05D008943 3.7e-27 125.6 102 66.7
Manes.06G170400 Manihot esculenta HOM05D007055 ORTHO05D008943 4.8e-27 125.2 141 56.0
TAR627G0757 Trochodendron aralioides HOM05D007055 ORTHO05D008943 4.8e-27 125.2 97 67.0
Atru.chr12.2186 Acer truncatum HOM05D007055 ORTHO05D008943 6.2e-27 124.8 142 52.8
MSTRG.22977 Avicennia marina HOM05D007055 ORTHO05D008943 8.2e-27 124.4 112 58.0
HanXRQChr13g0408571 Helianthus annuus HOM05D007055 ORTHO05D008943 8.2e-27 124.4 159 47.8
ATR1098G113 Amborella trichopoda HOM05D007055 ORTHO05D008943 1.8e-26 123.2 96 65.6
CAN.G943.31 Capsicum annuum HOM05D007055 ORTHO05D008943 1.8e-26 123.2 130 53.8
C06p52940 Brassica napus HOM05D007055 ORTHO05D008943 2.4e-26 122.9 90 68.9
BolC6t40312H Brassica oleracea HOM05D007055 ORTHO05D008943 2.4e-26 122.9 90 68.9
BcaB02g08664 Brassica carinata HOM05D007055 ORTHO05D008943 3.1e-26 122.5 121 57.0
AUR62044625 Chenopodium quinoa HOM05D007055 ORTHO05D008943 3.1e-26 122.5 82 74.4
A07p44210 Brassica napus HOM05D007055 ORTHO05D008943 5.3e-26 121.7 103 65.0
BraA07t31929Z Brassica rapa HOM05D007055 ORTHO05D008943 5.3e-26 121.7 103 65.0
THA.LOC104808116 Tarenaya hassleriana HOM05D007055 ORTHO05D008943 5.3e-26 121.7 149 51.7
BcaC08g47470 Brassica carinata HOM05D007055 ORTHO05D008943 6.9e-26 121.3 90 67.8
Sed0014529 Sechium edule HOM05D007055 ORTHO05D008943 6.9e-26 121.3 92 67.4
Eucgr.F03184 Eucalyptus grandis HOM05D007055 ORTHO05D008943 9.0e-26 120.9 101 63.4
Aa31LG4G1920 Aethionema arabicum HOM05D007055 ORTHO05D008943 2.6e-25 119.4 104 59.6
MELO3C010559.2 Cucumis melo HOM05D007055 ORTHO05D008943 2.6e-25 119.4 119 55.5
Cc05_g15950 Coffea canephora HOM05D007055 ORTHO05D008943 3.4e-25 119.0 122 54.9
MBI18_g28200_MAGBIO Magnolia biondii HOM05D007055 ORTHO05D008943 3.4e-25 119.0 149 50.3
Carub.0002s2594 Capsella rubella HOM05D007055 ORTHO05D008943 4.5e-25 118.6 115 57.4
BcaNung04909 Brassica carinata HOM05D007055 ORTHO05D008943 5.8e-25 118.2 113 58.4
HPP92_002254 Vanilla planifolia HOM05D007055 ORTHO05D008943 5.8e-25 118.2 79 75.9
Manes.06G169900 Manihot esculenta HOM05D007055 ORTHO05D008943 7.6e-25 117.9 125 56.0
Migut.H02189 Erythranthe guttata HOM05D007055 ORTHO05D008943 1.0e-24 117.5 98 59.2
ClCG11G016330 Citrullus lanatus HOM05D007055 ORTHO05D008943 1.7e-24 116.7 163 44.8
CsaV3_4G031800 Cucumis sativus L. HOM05D007055 ORTHO05D008943 1.7e-24 116.7 127 55.1
Nitab4.5_0001749g0090 Nicotiana tabacum HOM05D007055 ORTHO05D008943 1.7e-24 116.7 153 47.1
MD05G1216100 Malus domestica HOM05D007055 ORTHO05D008943 2.9e-24 115.9 89 68.5
Duzib150G0143 Durio zibethinus HOM05D007055 ORTHO05D008943 3.8e-24 115.5 84 72.6
Oeu002805.1 Olea europaea HOM05D007055 ORTHO05D008943 3.8e-24 115.5 139 50.4
unitig_699.g19681 Utricularia gibba HOM05D007055 ORTHO05D008943 3.8e-24 115.5 113 55.8
SGA_v2.0_scaffold2G00966 Striga asiatica HOM05D007055 ORTHO05D008943 8.4e-24 114.4 161 41.6
AUR62043058 Chenopodium quinoa HOM05D007055 ORTHO05D008943 1.1e-23 114.0 153 49.0
Prupe.4G143100 Prunus persica HOM05D007055 ORTHO05D008943 9.3e-23 110.9 95 62.1
Manes.06G170100 Manihot esculenta HOM05D007055 ORTHO05D008943 2.3e-21 106.3 89 64.0
BcaC08g45387 Brassica carinata HOM05D007055 ORTHO05D008943 1.5e-20 103.6 116 56.0
Zm00001eb173230 Zea mays HOM05D007055 ORTHO05D008943 2.5e-20 102.8 131 44.3
CDE12G0729 Ceratophyllum demersum HOM05D007055 ORTHO05D008943 2.8e-19 99.4 148 43.2
Os08g0129900 Oryza sativa ssp. japonica HOM05D007055 ORTHO05D008943 1.4e-18 97.1 99 48.5
Nitab4.5_0007742g0030 Nicotiana tabacum HOM05D007055 ORTHO05D008943 4.1e-18 95.5 86 59.3
SalBow5G1530 Salvia bowleyana HOM05D000091 ORTHO05D003024 5.3e-18 95.1 89 55.1
Pp3c15_3290 Physcomitrium patens HOM05D007055 ORTHO05D008943 1.2e-17 94.0 119 43.7
TPR.G9749 Trifolium pratense HOM05D007055 ORTHO05D008943 2.0e-17 93.2 58 81.0
Manes.06G171100 Manihot esculenta HOM05D007055 ORTHO05D008943 3.4e-17 92.4 72 68.1
vmacro11656 Vaccinium macrocarpon HOM05D007055 ORTHO05D008943 5.0e-16 88.6 66 72.7
Mapoly0112s0058 Marchantia polymorpha HOM05D007055 ORTHO05D008943 1.9e-15 86.7 153 35.3
SHI01886 Sapria himalayana HOM05D007055 ORTHO05D008943 5.5e-15 85.1 107 48.6
CBR_g41533 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-14 83.6 141 36.2
AagrBONN_evm.TU.Sc2ySwM_228.2782 Anthoceros agrestis HOM05D007055 ORTHO05D008943 1.8e-13 80.1 94 44.7
SMO367G1177 Selaginella moellendorffii HOM05D007055 ORTHO05D008943 2.2e-11 73.2 116 40.5


User provided reference genes

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