Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 9.0e-226 786.6 389 100.0
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 5.8e-132 474.9 330 70.0
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 7.3e-127 458.0 377 62.6
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 3.6e-126 455.7 373 61.7
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 1.3e-123 447.2 377 61.8
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 2.2e-123 446.4 362 61.9
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 4.1e-122 442.2 353 62.3
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 4.1e-122 442.2 352 63.1
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 3.5e-121 439.1 353 61.5
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 3.5e-121 439.1 351 61.3
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 4.6e-121 438.7 347 62.2
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 1.0e-120 437.6 342 63.2
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 1.7e-120 436.8 333 63.7
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 3.0e-120 436.0 378 58.2
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 5.1e-120 435.3 421 54.4
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 5.1e-120 435.3 344 63.1
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 8.6e-120 434.5 347 61.4
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 1.1e-119 434.1 366 61.2
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 1.1e-119 434.1 364 61.3
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 1.5e-119 433.7 341 62.5
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.9e-119 433.3 374 60.4
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 3.3e-119 432.6 377 59.2
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 4.3e-119 432.2 374 59.9
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.3e-119 432.2 323 65.0
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.2e-118 430.6 363 60.9
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 1.2e-118 430.6 341 63.3
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 3.6e-118 429.1 341 62.2
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 3.6e-118 429.1 345 61.2
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 3.6e-118 429.1 337 62.3
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 6.2e-118 428.3 343 61.2
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 8.1e-118 427.9 351 61.0
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 1.1e-117 427.6 352 61.4
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 1.4e-117 427.2 342 63.2
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 1.4e-117 427.2 347 60.5
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.8e-117 426.8 349 61.0
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 2.4e-117 426.4 370 60.8
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.0e-117 425.6 374 59.6
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 8.9e-117 424.5 372 57.8
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 3.4e-116 422.5 347 59.7
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 7.6e-116 421.4 345 60.0
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 7.6e-116 421.4 345 60.9
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 1.3e-115 420.6 376 58.2
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 1.7e-115 420.2 379 57.0
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 3.8e-115 419.1 369 58.3
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 4.9e-115 418.7 362 58.8
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 6.4e-115 418.3 346 59.5
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 4.2e-114 415.6 326 63.8
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 7.1e-114 414.8 377 57.3
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 9.3e-114 414.5 330 61.8
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 1.2e-113 414.1 375 57.9
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 1.2e-113 414.1 336 61.3
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 1.6e-113 413.7 347 58.5
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 4.6e-113 412.1 342 60.5
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 4.6e-113 412.1 362 58.3
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 7.8e-113 411.4 342 60.2
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 5.1e-112 408.7 379 55.9
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 2.5e-111 406.4 331 60.7
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 4.3e-111 405.6 406 55.4
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 5.6e-111 405.2 350 59.7
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 9.6e-111 404.4 352 56.5
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 2.1e-110 403.3 324 60.8
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 2.1e-110 403.3 373 55.2
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 8.1e-110 401.4 358 56.1
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 1.1e-109 401.0 325 61.5
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 1.4e-109 400.6 376 55.6
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 2.4e-109 399.8 301 62.8
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 5.3e-109 398.7 359 58.2
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 2.6e-108 396.4 313 61.3
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 3.4e-108 396.0 359 56.3
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 4.4e-108 395.6 359 57.4
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 7.6e-108 394.8 330 59.4
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 9.9e-108 394.4 374 55.9
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 1.7e-107 393.7 373 56.0
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 2.2e-107 393.3 374 56.1
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 4.9e-107 392.1 374 56.4
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.1e-106 391.0 353 58.4
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 1.9e-106 390.2 353 58.4
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 4.2e-106 389.0 293 64.2
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 7.1e-106 388.3 284 65.1
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 9.3e-106 387.9 369 55.0
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 2.1e-105 386.7 384 54.7
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 2.1e-105 386.7 373 54.7
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 8.7e-104 381.3 368 55.2
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 1.5e-103 380.6 368 55.2
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 2.5e-103 379.8 292 63.0
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 4.3e-103 379.0 340 56.8
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.3e-102 377.5 389 53.5
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 3.1e-101 372.9 358 54.7
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 1.2e-100 370.9 355 55.8
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 6.4e-99 365.2 336 56.8
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 1.2e-97 360.9 248 69.8
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 3.0e-96 356.3 316 58.2
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 2.8e-94 349.7 334 56.6
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 9.3e-90 334.7 259 63.3
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 1.3e-88 330.9 376 50.5
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 1.9e-87 327.0 243 63.0
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 3.7e-86 322.8 346 54.9
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 3.7e-86 322.8 316 52.5
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 7.6e-84 315.1 343 53.6
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 1.9e-79 300.4 360 46.4
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 1.6e-78 297.4 335 46.9
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 1.7e-75 287.3 249 57.4
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 2.7e-73 280.0 256 53.5
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 3.0e-72 276.6 267 54.3
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 3.9e-72 276.2 444 36.7
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 1.3e-70 271.2 249 55.8
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 5.3e-69 265.8 323 48.6
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.9e-67 260.0 319 46.4
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 5.0e-67 259.2 209 62.2
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 3.5e-60 236.5 494 32.4
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 1.0e-59 235.0 213 57.3
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 6.5e-59 232.3 342 41.8
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 5.5e-58 229.2 223 57.0
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 1.5e-50 204.5 156 64.1
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.4e-45 188.0 164 57.3
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 5.9e-44 182.6 124 68.5
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 7.7e-44 182.2 120 70.0
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 1.6e-41 174.5 171 53.2
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 1.1e-37 161.8 491 28.3
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 1.8e-37 161.0 393 31.8
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 9.1e-37 158.7 125 56.8
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 2.5e-34 150.6 368 31.0
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 4.3e-34 149.8 107 72.0
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 2.8e-33 147.1 125 55.2
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 7.3e-26 122.5 85 67.1
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 1.8e-24 117.9 77 68.8
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 3.7e-22 110.2 126 51.6
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 2.8e-17 94.0 71 63.4
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-16 92.0 63 68.3
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 1.0e-11 75.5 56 69.6
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 2.9e-06 57.4 132 31.1
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 8.4e-06 55.8 105 35.2
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 8.4e-06 55.8 144 29.9
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 8.4e-06 55.8 105 35.2


User provided reference genes

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