Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 8.3e-282 973.0 477 100.0
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 1.1e-225 786.6 475 80.8
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 2.1e-224 782.3 476 78.8
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.8e-223 779.2 477 78.6
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.5e-222 776.2 475 79.4
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 3.7e-221 771.5 475 78.7
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.0e-219 765.8 476 77.9
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.4e-219 765.0 473 78.4
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.3e-218 763.1 467 78.8
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-218 762.7 467 78.6
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.2e-218 762.3 473 78.2
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 2.2e-218 762.3 474 77.4
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.9e-218 761.9 469 78.5
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.8e-218 761.5 467 78.6
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.9e-218 761.1 472 80.1
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 8.4e-218 760.4 474 77.4
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.1e-216 755.7 467 77.9
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 3.5e-216 755.0 477 77.4
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.6e-216 754.6 470 77.4
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 7.9e-216 753.8 474 78.1
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.0e-215 753.4 467 78.4
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.3e-215 753.1 477 77.8
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.8e-215 752.7 476 77.1
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.9e-215 751.5 474 76.6
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 8.7e-215 750.4 468 77.1
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 7.4e-214 747.3 472 75.8
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 7.4e-214 747.3 472 75.6
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 9.6e-214 746.9 482 76.3
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.3e-213 746.5 476 76.5
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.3e-213 746.5 472 76.1
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.6e-213 746.1 474 76.2
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.1e-213 745.7 474 75.9
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.1e-213 745.7 471 75.4
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 3.7e-213 745.0 467 76.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.8e-212 742.7 472 76.5
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 9.0e-212 740.3 475 76.4
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 9.0e-212 740.3 474 75.7
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.5e-211 738.0 472 75.2
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.7e-210 736.1 477 75.1
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.7e-210 736.1 472 76.7
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.7e-210 736.1 457 77.7
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 8.4e-210 733.8 479 74.5
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.1e-209 733.4 474 74.9
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 5.5e-209 731.1 473 75.9
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.6e-208 729.6 469 77.2
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.5e-206 723.0 464 76.7
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.8e-205 718.8 474 73.8
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 6.3e-205 717.6 471 74.9
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 8.2e-205 717.2 469 73.8
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 8.2e-205 717.2 454 76.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.1e-204 716.8 471 73.7
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.5e-203 713.0 474 72.2
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.0e-203 712.6 471 74.3
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 4.5e-203 711.4 452 77.4
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.5e-203 711.4 445 76.9
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 5.9e-203 711.1 474 73.4
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 2.9e-202 708.8 465 74.0
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.2e-200 703.4 473 73.2
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.2e-200 703.4 473 73.4
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 4.6e-200 701.4 477 72.3
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 4.6e-200 701.4 476 72.5
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 4.6e-200 701.4 473 73.2
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.0e-199 700.3 427 78.5
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 2.3e-199 699.1 471 72.4
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.9e-199 698.4 472 72.9
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 7.4e-198 694.1 426 78.9
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.7e-197 693.0 475 73.1
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.8e-197 692.2 436 78.4
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 4.1e-196 688.3 463 73.9
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.5e-195 686.4 541 64.9
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 3.4e-195 685.3 475 72.0
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.2e-194 682.6 477 71.9
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.0e-194 681.4 462 73.8
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 3.2e-193 678.7 477 69.0
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 4.2e-193 678.3 473 71.5
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.8e-191 672.9 477 69.2
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 3.3e-190 668.7 466 69.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.3e-186 656.8 477 69.6
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.7e-186 656.4 506 65.2
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.2e-186 656.0 478 69.2
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 8.5e-186 654.1 475 69.9
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.5e-185 653.3 477 69.4
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.5e-185 653.3 470 69.6
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.9e-185 652.9 477 69.2
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.5e-185 652.5 476 68.9
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 3.2e-185 652.1 480 69.0
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 3.2e-185 652.1 475 69.7
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 7.2e-185 651.0 475 69.9
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 9.4e-185 650.6 479 68.9
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.2e-184 650.2 414 75.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.6e-184 649.8 517 63.1
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 3.0e-183 645.6 476 68.5
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 8.8e-183 644.0 475 69.1
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.1e-182 643.7 479 69.5
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 9.7e-182 640.6 474 68.8
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 9.7e-182 640.6 474 68.8
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.3e-181 640.2 474 69.0
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.3e-181 640.2 470 67.4
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 2.8e-181 639.0 469 67.6
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.3e-181 637.9 474 68.4
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-180 637.1 474 68.8
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 5.9e-179 631.3 530 62.8
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 4.2e-177 625.2 415 73.3
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.5e-174 616.7 475 64.6
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.6e-171 606.7 368 77.4
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.7e-171 605.9 447 68.2
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.2e-170 602.8 470 68.1
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.5e-166 590.1 469 65.9
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.2e-163 580.5 483 60.7
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-163 580.1 345 80.3
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.9e-161 573.2 509 58.0
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 7.3e-161 571.2 408 70.1
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.7e-154 550.1 492 58.5
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.3e-153 545.8 363 72.7
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.9e-149 531.9 469 61.2
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.0e-147 526.6 472 60.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 3.9e-146 522.3 471 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.2e-134 484.2 473 52.2
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.1e-131 473.4 546 47.3
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.4e-124 449.9 474 52.3
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.5e-113 413.3 329 66.6
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.3e-112 411.0 270 73.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 3.2e-108 396.4 306 66.3
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.5e-107 392.9 230 82.2
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 3.2e-92 343.2 484 42.8
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.1e-90 335.9 285 65.3
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 2.4e-87 327.0 382 45.0
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.5e-84 315.8 203 74.4
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.7e-80 303.1 275 59.6
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 2.7e-75 287.0 497 35.8
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.1e-71 271.9 248 60.9
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.0e-69 268.5 506 36.0
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.0e-69 266.2 272 50.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.7e-67 260.4 458 38.4
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.4e-63 248.1 465 37.4
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.7e-56 223.4 295 46.4
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.8e-55 221.1 169 66.9
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.2e-52 210.3 113 85.0
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-51 208.4 113 83.2
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.6e-51 206.8 113 83.2
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.6e-51 206.8 209 52.2
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.4e-49 199.9 181 58.0
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 2.8e-48 197.2 198 51.5
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 1.1e-44 185.3 205 50.7
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.0e-42 176.8 113 74.3
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.4e-39 168.3 107 75.7
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.3e-37 161.8 125 61.6
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 8.6e-37 159.1 314 34.4
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.9e-36 157.9 107 73.8
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.3e-32 145.2 116 60.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 8.3e-32 142.5 92 69.6
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.2e-30 138.7 122 56.6
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.6e-29 132.9 67 94.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 5.8e-25 119.8 125 56.8
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 3.0e-21 107.5 66 75.8
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 7.6e-17 92.8 58 74.1
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 5.1e-13 80.1 93 50.5
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 9.9e-09 65.9 41 80.5
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 4.9e-08 63.5 45 71.1
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 9.3e-07 59.3 39 74.4
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 2.1e-06 58.2 39 71.8


User provided reference genes

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