Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 6.5e-48 193.7 99 100.0
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.3e-16 89.0 110 50.0
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 3.6e-14 81.6 144 38.9
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 6.8e-13 77.4 88 48.9
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 8.9e-13 77.0 142 40.8
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 2.6e-12 75.5 107 43.9
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.6e-12 75.5 107 43.9
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 4.4e-12 74.7 110 43.6
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 4.4e-12 74.7 107 43.9
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 4.4e-12 74.7 102 46.1
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 7.5e-12 73.9 111 43.2
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.3e-11 73.2 91 49.5
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.7e-11 72.8 81 48.1
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 2.9e-11 72.0 93 49.5
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 2.9e-11 72.0 93 49.5
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 3.7e-11 71.6 91 45.1
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 6.4e-11 70.9 85 49.4
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 8.3e-11 70.5 102 41.2
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 1.1e-10 70.1 107 42.1
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.1e-10 70.1 84 45.2
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.4e-10 69.7 95 41.1
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.4e-10 69.7 86 44.2
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 1.4e-10 69.7 95 49.5
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 1.9e-10 69.3 82 52.4
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 2.4e-10 68.9 111 40.5
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 2.4e-10 68.9 79 44.3
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 4.1e-10 68.2 106 41.5
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 4.1e-10 68.2 106 41.5
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 4.1e-10 68.2 106 41.5
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 5.4e-10 67.8 108 39.8
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 5.4e-10 67.8 106 40.6
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 5.4e-10 67.8 106 40.6
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 5.4e-10 67.8 109 42.2
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 5.4e-10 67.8 89 47.2
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 7.1e-10 67.4 89 47.2
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 9.2e-10 67.0 96 41.7
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 1.2e-09 66.6 87 42.5
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.2e-09 66.6 84 45.2
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.6e-09 66.2 79 48.1
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.1e-09 65.9 104 41.3
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 2.1e-09 65.9 104 42.3
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 2.1e-09 65.9 104 42.3
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 2.1e-09 65.9 104 42.3
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 2.1e-09 65.9 104 42.3
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 2.1e-09 65.9 104 42.3
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 2.1e-09 65.9 88 45.5
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 2.7e-09 65.5 87 41.4
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 2.7e-09 65.5 92 47.8
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.7e-09 65.5 99 41.4
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.7e-09 65.5 99 41.4
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 2.7e-09 65.5 87 44.8
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 3.5e-09 65.1 97 40.2
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 3.5e-09 65.1 87 41.4
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 3.5e-09 65.1 89 44.9
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 3.5e-09 65.1 79 46.8
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 3.5e-09 65.1 98 44.9
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 4.6e-09 64.7 88 43.2
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 4.6e-09 64.7 87 42.5
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 4.6e-09 64.7 100 38.0
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 4.6e-09 64.7 112 40.2
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 6.0e-09 64.3 95 38.9
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 6.0e-09 64.3 90 43.3
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 7.8e-09 63.9 94 39.4
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 7.8e-09 63.9 94 38.3
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 7.8e-09 63.9 103 39.8
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.0e-08 63.5 94 43.6
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.0e-08 63.5 78 48.7
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 1.0e-08 63.5 91 39.6
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.0e-08 63.5 97 42.3
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 1.3e-08 63.2 87 40.2
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.3e-08 63.2 82 47.6
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.3e-08 63.2 108 41.7
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.7e-08 62.8 94 38.3
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.7e-08 62.8 94 38.3
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.7e-08 62.8 87 44.8
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.3e-08 62.4 108 38.9
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 2.3e-08 62.4 94 37.2
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 2.3e-08 62.4 94 37.2
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 2.3e-08 62.4 99 35.4
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.3e-08 62.4 104 37.5
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 2.3e-08 62.4 104 40.4
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 3.0e-08 62.0 93 40.9
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 3.0e-08 62.0 100 43.0
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 3.9e-08 61.6 84 46.4
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.9e-08 61.6 98 37.8
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.9e-08 61.6 85 45.9
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 5.1e-08 61.2 93 39.8
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 5.1e-08 61.2 65 55.4
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 5.1e-08 61.2 95 41.1
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 6.6e-08 60.8 100 40.0
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 6.6e-08 60.8 98 40.8
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 6.6e-08 60.8 96 39.6
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.6e-08 60.5 88 44.3
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 8.6e-08 60.5 84 41.7
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 8.6e-08 60.5 99 37.4
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.1e-07 60.1 104 40.4
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.1e-07 60.1 108 41.7
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.9e-07 59.3 96 39.6
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 2.5e-07 58.9 85 38.8
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 2.5e-07 58.9 91 42.9
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.5e-07 58.9 108 39.8
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.5e-07 58.9 108 39.8
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 2.5e-07 58.9 84 41.7
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 3.3e-07 58.5 80 46.2
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 3.3e-07 58.5 80 45.0
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 4.3e-07 58.2 92 37.0
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 4.3e-07 58.2 92 43.5
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 4.3e-07 58.2 91 41.8
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 4.3e-07 58.2 91 41.8
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 5.6e-07 57.8 76 42.1
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.6e-07 57.8 108 34.3
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 7.3e-07 57.4 76 42.1
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 7.3e-07 57.4 76 42.1
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 7.3e-07 57.4 76 43.4
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.2e-06 56.6 108 38.0
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 1.2e-06 56.6 93 37.6
Nn3g20788 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.2e-06 56.6 82 42.7
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 1.2e-06 56.6 120 34.2
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.6e-06 56.2 70 50.0
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 1.6e-06 56.2 83 44.6
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.1e-06 55.8 103 35.0
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.1e-06 55.8 98 40.8
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.8e-06 55.5 81 46.9
MBI07_g23436_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 3.6e-06 55.1 95 38.9
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 4.7e-06 54.7 91 37.4
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 4.7e-06 54.7 104 36.5
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 4.7e-06 54.7 106 33.0
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.7e-06 54.7 110 34.5
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 4.7e-06 54.7 110 34.5
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 4.7e-06 54.7 97 37.1
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.2e-06 54.3 124 33.1
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.2e-06 54.3 110 34.5
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 8.1e-06 53.9 97 36.1
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 8.1e-06 53.9 47 61.7
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 8.1e-06 53.9 124 33.9
Hma1.2p1_0325F.1_g125970 Hydrangea macrophylla HOM05D004022 ORTHO05D004090 8.1e-06 53.9 67 49.3
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 8.1e-06 53.9 97 36.1


User provided reference genes

Program Settings