Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 3202.9 1638 100.0
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1864.4 1652 59.7
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1802.7 1660 57.5
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1772.3 1652 57.3
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1762.7 1650 57.2
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1758.8 1648 56.4
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1743.4 1651 56.1
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1730.3 1652 55.4
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1722.2 1655 55.5
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1712.6 1653 55.2
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1711.8 1650 54.8
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1705.6 1652 54.5
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1693.3 1647 54.6
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1686.4 1703 54.1
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1679.1 1648 53.9
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1675.6 1647 55.3
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1667.1 1650 54.1
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1647.9 1733 52.7
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1641.7 1652 53.9
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1640.2 1655 54.2
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1625.5 1650 52.8
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1621.3 1749 51.7
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1613.6 1653 52.6
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1611.3 1648 53.6
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1610.9 1651 52.2
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1609.0 1650 52.8
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1604.7 1653 52.1
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1602.4 1650 51.5
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1602.0 1651 52.4
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1602.0 1654 52.7
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1602.0 1654 52.7
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1594.3 1653 52.6
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1592.0 1652 52.9
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1587.4 1652 51.8
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1585.5 1653 51.5
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1580.8 1658 51.6
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1579.7 1685 51.0
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1570.4 1794 48.9
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1567.7 1653 50.2
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1565.8 1651 51.1
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1558.1 1651 51.3
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1556.6 1835 47.9
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1550.4 1666 50.1
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1545.0 1645 50.6
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1544.3 1657 50.8
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1542.3 1659 50.0
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1541.9 1661 50.9
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1538.1 1658 49.9
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1532.3 1661 50.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1518.8 1653 50.7
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1502.6 1655 49.7
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1477.6 1651 49.7
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1467.2 1502 52.4
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1466.8 1649 48.8
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1456.8 1648 48.1
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1456.8 1653 48.6
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1456.8 1653 48.6
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1456.8 1653 48.6
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1455.3 1650 48.8
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1452.2 1651 48.6
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1449.9 1646 50.7
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1447.2 1646 48.7
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1446.4 1673 48.3
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1445.6 1650 47.3
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1444.5 1849 46.4
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1443.3 1648 48.0
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1436.4 1656 48.2
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1436.4 1656 48.2
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1434.1 1648 47.4
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1414.8 1523 49.7
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1391.7 1303 57.2
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1388.6 1652 46.8
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1379.4 1762 45.7
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1372.8 1300 55.1
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1358.2 1679 46.6
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1335.1 1249 57.2
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1286.9 1352 51.8
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1286.6 1722 44.4
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1261.9 1658 44.2
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1253.8 1683 45.2
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1215.7 1647 43.7
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1157.5 1162 53.2
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1105.5 1647 41.0
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1099.7 1181 52.2
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1085.5 1696 40.8
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 2.9e-310 1069.3 1023 55.3
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 5.5e-309 1065.1 1656 40.6
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.7e-306 1055.0 1170 50.3
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 3.2e-285 986.1 1094 50.2
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 3.0e-275 953.0 970 53.2
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 5.4e-256 889.0 802 58.6
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 6.0e-247 859.0 840 56.9
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 4.0e-235 819.7 941 48.8
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 2.2e-209 734.2 644 58.1
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 3.7e-204 716.8 953 45.6
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 9.4e-200 702.2 723 53.5
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 4.3e-197 693.3 1745 30.8
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 9.4e-184 649.0 611 55.5
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 7.2e-176 622.9 626 52.7
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 2.7e-162 577.8 720 46.7
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.7e-156 557.4 575 51.1
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 7.5e-149 533.1 621 47.8
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.7e-146 524.6 536 52.8
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.5e-146 524.2 592 50.5
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 3.0e-145 521.2 1683 27.7
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 4.4e-125 454.1 437 54.2
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.6e-122 445.7 579 43.5
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 6.9e-118 430.3 410 56.3
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-116 425.2 443 51.2
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.6e-111 409.1 632 40.0
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 9.0e-110 403.3 372 55.6
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 3.7e-103 381.3 456 47.6
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 6.9e-94 350.5 352 55.7
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 9.0e-94 350.1 341 54.3
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.1e-91 343.2 334 52.4
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 7.1e-91 340.5 433 46.4
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 9.3e-91 340.1 345 53.3
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.5e-85 322.8 326 53.1
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.0e-81 310.1 617 35.3
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 2.0e-77 295.8 400 46.2
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.4e-70 273.1 545 35.0
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.0e-64 252.7 261 53.6
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 2.4e-62 245.7 211 57.8
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 4.0e-57 228.4 239 50.2
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 1.5e-56 226.5 194 58.2
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 2.0e-56 226.1 229 54.1
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 8.0e-50 204.1 229 49.8
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 6.8e-49 201.1 829 25.3
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 2.2e-47 196.1 148 66.9
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.0e-45 189.5 203 51.7
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.0e-45 189.5 307 41.7
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 6.6e-44 184.5 266 43.2
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 1.6e-42 179.9 852 25.5
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.0e-40 172.9 217 47.5
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.4e-38 166.8 191 50.3
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 5.4e-38 164.9 163 55.2
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 8.6e-36 157.5 179 50.3
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.5e-35 156.0 271 38.4
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.6e-34 153.3 236 39.4
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 4.7e-34 151.8 172 49.4
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 3.1e-33 149.1 131 59.5
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 3.4e-32 145.6 132 54.5
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.2e-31 142.9 221 41.6
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.4e-30 139.4 147 51.0
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 7.8e-29 134.4 122 53.3
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 1.7e-28 133.3 137 54.7
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.6e-27 128.3 131 55.0
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 8.1e-26 124.4 184 40.2
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.4e-24 118.6 134 50.0
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 2.3e-20 106.3 89 55.1
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 5.1e-20 105.1 117 45.3
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.2e-18 100.5 75 61.3
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.6e-18 100.1 172 38.4
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 4.4e-16 92.0 93 50.5
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 7.6e-16 91.3 127 40.9
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 5.6e-11 75.1 52 61.5
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 9.6e-11 74.3 122 41.0
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 2.8e-10 72.8 121 36.4
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 1.2e-08 67.4 120 36.7
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 2.0e-08 66.6 106 45.3
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.0e-08 66.6 81 53.1
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 9.9e-08 64.3 57 52.6
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 9.9e-08 64.3 57 52.6
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 4.9e-07 62.0 53 62.3


User provided reference genes

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