Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007400 Simmondsia chinensis HOM05D017028 ORTHO05D016971 1.8e-80 304.7 663 100.0
Sc03g0007380 Simmondsia chinensis HOM05D000029 ORTHO05D000854 5.0e-43 180.3 230 87.0
Sc03g0007390 Simmondsia chinensis HOM05D017028 ORTHO05D016971 5.0e-43 180.3 664 89.2
Sc03g0007370 Simmondsia chinensis HOM05D017028 ORTHO05D016971 6.8e-24 116.7 69 84.1
Duzib116G0141 Durio zibethinus HOM05D000029 ORTHO05D000854 1.1e-18 99.4 223 57.8
Thecc.08G046900 Theobroma cacao HOM05D000029 ORTHO05D000854 3.3e-18 97.8 232 50.0
Actinidia37938 Actinidia chinensis HOM05D000029 ORTHO05D000854 4.3e-18 97.4 95 56.8
Sp5g30940 Schrenkiella parvula HOM05D000029 ORTHO05D000854 4.3e-18 97.4 95 55.8
THA.LOC104813786 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 7.3e-18 96.7 97 53.6
THA.LOC104811419 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 9.5e-18 96.3 90 58.9
AT1G75820 Arabidopsis thaliana HOM05D000029 ORTHO05D000854 1.6e-17 95.5 94 54.3
Cfa013972 Carpinus fangiana HOM05D000029 ORTHO05D000854 1.6e-17 95.5 95 51.6
CiPaw.07G147600 Carya illinoinensis HOM05D000029 ORTHO05D000854 2.1e-17 95.1 94 55.3
Duzib041G0705 Durio zibethinus HOM05D000029 ORTHO05D000854 2.8e-17 94.7 95 55.8
Thhalv10018069m.g Eutrema salsugineum HOM05D000029 ORTHO05D000854 3.6e-17 94.4 95 53.7
COL.COLO4_26126 Corchorus olitorius HOM05D000029 ORTHO05D000854 6.2e-17 93.6 104 53.8
Haze_22657 Corylus avellana HOM05D000029 ORTHO05D000854 6.2e-17 93.6 92 52.2
Ciclev10000156m.g Citrus clementina HOM05D000029 ORTHO05D000854 8.0e-17 93.2 92 58.7
QL02p012056 Quercus lobata HOM05D000029 ORTHO05D000854 8.0e-17 93.2 95 52.6
Gohir.D05G188300 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.4e-16 92.4 223 43.0
Dinv39533 Davidia involucrata HOM05D000029 ORTHO05D000854 1.8e-16 92.0 97 48.5
Glyma.11G114200 Glycine max HOM05D000029 ORTHO05D000854 2.3e-16 91.7 87 51.7
Carub.0002s2267 Capsella rubella HOM05D000029 ORTHO05D000854 3.1e-16 91.3 95 52.6
VMungo1127G1012 Vigna mungo HOM05D000029 ORTHO05D000854 3.1e-16 91.3 95 48.4
AL2G35810 Arabidopsis lyrata HOM05D000029 ORTHO05D000854 6.8e-16 90.1 94 52.1
Gohir.A05G185500 Gossypium hirsutum HOM05D000029 ORTHO05D000854 6.8e-16 90.1 95 54.7
RcHm_v2.0_Chr6g0303151 Rosa chinensis HOM05D000029 ORTHO05D000854 6.8e-16 90.1 99 52.5
Aa31LG4G6020 Aethionema arabicum HOM05D000029 ORTHO05D000854 8.9e-16 89.7 91 53.8
Ah.14g088500 Amaranthus hybridus HOM05D006759 ORTHO05D008633 8.9e-16 89.7 75 56.0
A07p41350 Brassica napus HOM05D000029 ORTHO05D000854 8.9e-16 89.7 93 54.8
BraA07t31668Z Brassica rapa HOM05D000029 ORTHO05D000854 8.9e-16 89.7 93 54.8
CARHR069240 Cardamine hirsuta HOM05D000029 ORTHO05D000854 8.9e-16 89.7 97 49.5
QL02p012034 Quercus lobata HOM05D000029 ORTHO05D000854 8.9e-16 89.7 91 51.6
Gorai.009G193600 Gossypium raimondii HOM05D000029 ORTHO05D000854 1.2e-15 89.4 95 53.7
BcaC08g47324 Brassica carinata HOM05D000029 ORTHO05D000854 2.0e-15 88.6 97 50.5
C06p49770 Brassica napus HOM05D000029 ORTHO05D000854 2.0e-15 88.6 97 50.5
BolC6t40016H Brassica oleracea HOM05D000029 ORTHO05D000854 2.0e-15 88.6 97 50.5
Lj3g0005112 Lotus japonicus HOM05D000029 ORTHO05D000854 2.0e-15 88.6 81 51.9
Sc15g0004850 Simmondsia chinensis HOM05D000029 ORTHO05D000854 2.6e-15 88.2 96 50.0
Cfa013973 Carpinus fangiana HOM05D000029 ORTHO05D000854 3.4e-15 87.8 95 48.4
BcaC08g47071 Brassica carinata HOM05D000029 ORTHO05D008832 4.4e-15 87.4 72 61.1
Gohir.A02G082800 Gossypium hirsutum HOM05D000029 ORTHO05D000854 4.4e-15 87.4 222 52.7
Glyma.11G114100 Glycine max HOM05D000029 ORTHO05D000854 5.8e-15 87.0 102 46.1
Phvul.011G042000 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 5.8e-15 87.0 94 46.8
TAR625G0714 Trochodendron aralioides HOM05D000029 ORTHO05D000854 5.8e-15 87.0 101 51.5
TWI12G1049 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 7.5e-15 86.7 229 61.6
PSO675G7340 Papaver somniferum HOM05D000029 ORTHO05D000854 9.8e-15 86.3 102 46.1
Gorai.009G269700 Gossypium raimondii HOM05D000029 ORTHO05D000854 1.3e-14 85.9 91 52.7
Prupe.1G363300 Prunus persica HOM05D000029 ORTHO05D000854 1.3e-14 85.9 224 65.6
CSS0021294 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 1.7e-14 85.5 75 58.7
CSS0049239 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 1.7e-14 85.5 75 58.7
Gohir.D02G098300 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.7e-14 85.5 94 51.1
Nn5g30753 Nelumbo nucifera HOM05D000029 ORTHO05D000854 1.7e-14 85.5 93 50.5
CSS0031229 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 2.2e-14 85.1 109 50.5
Hma1.2p1_0733F.1_g210220 Hydrangea macrophylla HOM05D000029 ORTHO05D000854 2.2e-14 85.1 98 50.0
Dinv31865 Davidia involucrata HOM05D000029 ORTHO05D000854 3.7e-14 84.3 95 53.7
Gorai.005G112100 Gossypium raimondii HOM05D000029 ORTHO05D000854 3.7e-14 84.3 94 51.1
Nitab4.5_0003349g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 3.7e-14 84.3 108 46.3
Migut.N03171 Erythranthe guttata HOM05D000029 ORTHO05D000854 4.9e-14 84.0 102 51.0
Lsat_1_v5_gn_8_30001 Lactuca sativa HOM05D000029 ORTHO05D000854 4.9e-14 84.0 89 49.4
PSO541G5153 Papaver somniferum HOM05D000029 ORTHO05D000854 4.9e-14 84.0 102 45.1
QL02p012090 Quercus lobata HOM05D000029 ORTHO05D000854 4.9e-14 84.0 98 49.0
Cfa013974 Carpinus fangiana HOM05D000029 ORTHO05D000854 6.4e-14 83.6 91 50.5
ClCG05G018180 Citrullus lanatus HOM05D000029 ORTHO05D000854 6.4e-14 83.6 91 50.5
Atru.chr13.260 Acer truncatum HOM05D000029 ORTHO05D000854 8.3e-14 83.2 90 52.2
Cpa.g.sc26.309 Carica papaya HOM05D000029 ORTHO05D000854 8.3e-14 83.2 98 51.0
MELO3C003743.2 Cucumis melo HOM05D000029 ORTHO05D000854 8.3e-14 83.2 92 48.9
Phvul.011G042100 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 8.3e-14 83.2 97 45.4
arahy.Tifrunner.gnm1.ann1.8BA7G9 Arachis hypogaea HOM05D000029 ORTHO05D000854 1.1e-13 82.8 76 56.6
arahy.Tifrunner.gnm1.ann1.97EMNK Arachis hypogaea HOM05D000029 ORTHO05D000854 1.1e-13 82.8 76 56.6
FvH4_2g38230 Fragaria vesca HOM05D000029 ORTHO05D000854 1.1e-13 82.8 97 49.5
Lsat_1_v5_gn_8_30160 Lactuca sativa HOM05D000029 ORTHO05D000854 1.1e-13 82.8 73 57.5
Gohir.A05G256700 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.4e-13 82.4 91 49.5
Lj4C798T10 Lonicera japonica HOM05D000029 ORTHO05D000854 1.4e-13 82.4 106 48.1
Oeu061974.1 Olea europaea HOM05D000029 ORTHO05D000854 1.4e-13 82.4 106 45.3
vmacro04366 Vaccinium macrocarpon HOM05D000029 ORTHO05D000854 1.4e-13 82.4 91 51.6
FAN27G2151 Fragaria x ananassa HOM05D000029 ORTHO05D000854 1.9e-13 82.0 97 49.5
Lalb_Chr01g0002311 Lupinus albus HOM05D000029 ORTHO05D000854 1.9e-13 82.0 89 47.2
Rhsim11G0137300 Rhododendron simsii HOM05D000029 ORTHO05D000854 1.9e-13 82.0 90 50.0
Glyma.12G040000 Glycine max HOM05D000029 ORTHO05D000854 2.4e-13 81.6 102 44.1
TAR381G0556 Trochodendron aralioides HOM05D000029 ORTHO05D000854 2.4e-13 81.6 95 49.5
TAR381G0687 Trochodendron aralioides HOM05D000029 ORTHO05D000854 2.4e-13 81.6 95 49.5
FAN15G2748 Fragaria x ananassa HOM05D000029 ORTHO05D000854 3.2e-13 81.3 97 49.5
Lalb_Chr03g0025491 Lupinus albus HOM05D000029 ORTHO05D000854 3.2e-13 81.3 90 47.8
Sed0018613 Sechium edule HOM05D000029 ORTHO05D000854 3.2e-13 81.3 102 43.1
Actinidia00278 Actinidia chinensis HOM05D000029 ORTHO05D000854 4.1e-13 80.9 65 58.5
Medtr4g070950 Medicago truncatula HOM05D000029 ORTHO05D000854 4.1e-13 80.9 102 41.2
Nn6g32016 Nelumbo nucifera HOM05D000029 ORTHO05D000854 4.1e-13 80.9 93 46.2
Rhsim07G0250600 Rhododendron simsii HOM05D000029 ORTHO05D000854 4.1e-13 80.9 91 49.5
SGA_v2.0_scaffold19G08549 Striga asiatica HOM05D000029 ORTHO05D000854 5.4e-13 80.5 98 51.0
CsaV3_3G045960 Cucumis sativus L. HOM05D000029 ORTHO05D000854 9.2e-13 79.7 100 48.0
PGR031G0445 Punica granatum HOM05D000029 ORTHO05D000854 9.2e-13 79.7 98 50.0
FAN20G1462 Fragaria x ananassa HOM05D000029 ORTHO05D000854 1.2e-12 79.3 93 49.5
Oeu014167.2 Olea europaea HOM05D000029 ORTHO05D000854 1.2e-12 79.3 98 41.8
Manes.11G162200 Manihot esculenta HOM05D000029 ORTHO05D000854 2.1e-12 78.6 96 50.0
TWI56G1368 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 2.1e-12 78.6 220 45.0
Migut.C00856 Erythranthe guttata HOM05D000029 ORTHO05D000854 4.6e-12 77.4 103 43.7
MD08G1010700 Malus domestica HOM05D000029 ORTHO05D000854 7.8e-12 76.6 89 50.6
CANSAT25G3014 Cannabis sativa HOM05D000029 ORTHO05D000854 1.0e-11 76.3 95 47.4
HanXRQChr14g0431061 Helianthus annuus HOM05D000029 ORTHO05D000854 1.0e-11 76.3 100 44.0
Peaxi162Scf00553g00620 Petunia axillaris HOM05D000029 ORTHO05D000854 1.0e-11 76.3 95 48.4
RcHm_v2.0_Chr2g0119001 Rosa chinensis HOM05D000029 ORTHO05D000854 1.0e-11 76.3 225 64.0
Ciclev10003935m.g Citrus clementina HOM05D000029 ORTHO05D000854 1.3e-11 75.9 53 66.0
GSVIVG01009941001 Vitis vinifera HOM05D000029 ORTHO05D000854 1.3e-11 75.9 78 55.1
Aqoxy6G02186 Aquilegia oxysepala HOM05D000029 ORTHO05D000854 1.7e-11 75.5 94 48.9
MD15G1010800 Malus domestica HOM05D000029 ORTHO05D000854 1.7e-11 75.5 93 48.4
RcHm_v2.0_Chr2g0119031 Rosa chinensis HOM05D000029 ORTHO05D000854 1.7e-11 75.5 97 49.5
Psat7g183240 Pisum sativum HOM05D000029 ORTHO05D000854 2.3e-11 75.1 98 43.9
Potri.005G241500 Populus trichocarpa HOM05D000029 ORTHO05D000854 2.3e-11 75.1 92 54.3
TPR.G30515 Trifolium pratense HOM05D000029 ORTHO05D000854 2.3e-11 75.1 90 42.2
Eucgr.H00964 Eucalyptus grandis HOM05D000029 ORTHO05D000854 3.9e-11 74.3 96 47.9
Lj4C21T5 Lonicera japonica HOM05D000029 ORTHO05D000854 3.9e-11 74.3 61 57.4
Manes.05G145600 Manihot esculenta HOM05D000029 ORTHO05D000854 3.9e-11 74.3 101 47.5
RcHm_v2.0_Chr2g0120661 Rosa chinensis HOM05D000029 ORTHO05D000854 5.1e-11 73.9 97 48.5
CAN.G311.45 Capsicum annuum HOM05D000029 ORTHO05D000854 6.6e-11 73.6 101 40.6
Ca_20907_v3 Cicer arietinum L. HOM05D000029 ORTHO05D000854 6.6e-11 73.6 96 43.8
Hund05177 Selenicereus undatus HOM05D000029 ORTHO05D000854 8.6e-11 73.2 106 45.3
HanXRQChr12g0366831 Helianthus annuus HOM05D000029 ORTHO05D000854 1.5e-10 72.4 95 43.2
MBI09_g22807_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D000854 2.5e-10 71.6 96 45.8
Potri.002G019900 Populus trichocarpa HOM05D000029 ORTHO05D000854 3.3e-10 71.2 99 46.5
ECA238G2525 Erigeron canadensis HOM05D000029 ORTHO05D000854 4.3e-10 70.9 100 44.0
Solyc04g081590.4 Solanum lycopersicum HOM05D000029 ORTHO05D000854 5.6e-10 70.5 99 41.4
PGSC0003DMG400009941 Solanum tuberosum HOM05D000029 ORTHO05D000854 7.3e-10 70.1 97 41.2
SGA_v2.0_scaffold92G28209 Striga asiatica HOM05D000029 ORTHO05D000854 7.3e-10 70.1 93 44.1
DCAR_022991 Daucus carota HOM05D000029 ORTHO05D000854 9.5e-10 69.7 74 48.6
Medtr4g070970 Medicago truncatula HOM05D000029 ORTHO05D000854 9.5e-10 69.7 63 50.8
HPP92_008346 Vanilla planifolia HOM05D000029 ORTHO05D000854 9.5e-10 69.7 92 45.7
CiPaw.07G147700 Carya illinoinensis HOM05D000029 ORTHO05D008832 1.6e-09 68.9 54 64.8
AUR62041480 Chenopodium quinoa HOM05D000029 ORTHO05D000854 1.6e-09 68.9 98 39.8
AUR62040553 Chenopodium quinoa HOM05D000029 ORTHO05D000854 2.1e-09 68.6 73 49.3
SalBow7G3307 Salvia bowleyana HOM05D000029 ORTHO05D000854 2.1e-09 68.6 92 46.7
Sabra02G0016200 Salix brachista HOM05D000029 ORTHO05D000854 2.8e-09 68.2 97 49.5
SEGI_28524 Sequoiadendron giganteum HOM05D000029 ORTHO05D000854 2.8e-09 68.2 79 43.0
DCAR_014030 Daucus carota HOM05D000029 ORTHO05D008832 3.6e-09 67.8 73 49.3
Prupe.6G163000 Prunus persica HOM05D000029 ORTHO05D000854 3.6e-09 67.8 92 45.7
ECA238G3421 Erigeron canadensis HOM05D000029 ORTHO05D000854 4.7e-09 67.4 102 43.1
Sabra05G0187000 Salix brachista HOM05D000029 ORTHO05D013250 4.7e-09 67.4 92 48.9
Ah.11g039930 Amaranthus hybridus HOM05D000029 ORTHO05D000854 1.4e-08 65.9 74 41.9
Sopen04g035200 Solanum pennellii HOM05D000029 ORTHO05D000854 1.4e-08 65.9 59 50.8
Gohir.D05G258350 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.8e-08 65.5 67 49.3
Lsat_1_v5_gn_2_12620 Lactuca sativa HOM05D000029 ORTHO05D000854 1.8e-08 65.5 79 48.1
SalBow8G4622 Salvia bowleyana HOM05D000029 ORTHO05D000854 1.8e-08 65.5 91 39.6
ECA238G1034 Erigeron canadensis HOM05D000029 ORTHO05D000854 1.2e-07 62.8 64 50.0
EL10Ac3g05538 Beta vulgaris HOM05D000029 ORTHO05D000854 2.6e-07 61.6 94 38.3
CDE04G0785 Ceratophyllum demersum HOM05D000029 ORTHO05D000854 4.4e-07 60.8 66 50.0
Os06g0717200 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D000854 4.4e-07 60.8 78 42.3
CDE02G0257 Ceratophyllum demersum HOM05D000029 ORTHO05D000854 2.2e-06 58.5 67 47.8
Cc10_g01470 Coffea canephora HOM05D000029 ORTHO05D000854 2.2e-06 58.5 65 50.8
Atru.chr13.263 Acer truncatum HOM05D000029 ORTHO05D000854 2.9e-06 58.2 46 58.7
MD05G1138900 Malus domestica HOM05D000029 ORTHO05D000854 3.7e-06 57.8 100 41.0
Actinidia12253 Actinidia chinensis HOM05D001592 ORTHO05D001533 4.9e-06 57.4 104 40.4
MD05G1139200 Malus domestica HOM05D000029 ORTHO05D000854 6.4e-06 57.0 99 42.4


User provided reference genes

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