Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007390 Simmondsia chinensis HOM05D017028 ORTHO05D016971 5.1e-72 276.6 664 100.0
Sc03g0007400 Simmondsia chinensis HOM05D017028 ORTHO05D016971 3.8e-43 180.6 664 89.2
Sc03g0007380 Simmondsia chinensis HOM05D000029 ORTHO05D000854 2.4e-37 161.4 149 85.2
Sc03g0007370 Simmondsia chinensis HOM05D017028 ORTHO05D016971 2.3e-27 128.3 69 91.3
Duzib116G0141 Durio zibethinus HOM05D000029 ORTHO05D000854 2.9e-22 111.3 224 59.4
Gohir.D05G188300 Gossypium hirsutum HOM05D000029 ORTHO05D000854 2.3e-19 101.7 224 44.6
Thecc.08G046900 Theobroma cacao HOM05D000029 ORTHO05D000854 6.6e-19 100.1 232 48.7
Duzib041G0705 Durio zibethinus HOM05D000029 ORTHO05D000854 3.3e-18 97.8 224 46.9
COL.COLO4_26126 Corchorus olitorius HOM05D000029 ORTHO05D000854 5.6e-18 97.1 105 54.3
TWI12G1049 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 2.1e-17 95.1 221 63.8
Gohir.D02G098300 Gossypium hirsutum HOM05D000029 ORTHO05D000854 3.6e-17 94.4 224 60.3
Actinidia37938 Actinidia chinensis HOM05D000029 ORTHO05D000854 8.1e-17 93.2 99 52.5
Gorai.005G112100 Gossypium raimondii HOM05D000029 ORTHO05D000854 8.1e-17 93.2 224 60.3
CiPaw.07G147600 Carya illinoinensis HOM05D000029 ORTHO05D000854 2.3e-16 91.7 94 58.5
Cfa013972 Carpinus fangiana HOM05D000029 ORTHO05D000854 4.0e-16 90.9 97 50.5
Dinv39533 Davidia involucrata HOM05D000029 ORTHO05D000854 6.8e-16 90.1 102 48.0
Gohir.A05G185500 Gossypium hirsutum HOM05D000029 ORTHO05D000854 6.8e-16 90.1 97 52.6
Gorai.009G193600 Gossypium raimondii HOM05D000029 ORTHO05D000854 6.8e-16 90.1 97 51.5
Ciclev10000156m.g Citrus clementina HOM05D000029 ORTHO05D000854 1.2e-15 89.4 91 57.1
Haze_22657 Corylus avellana HOM05D000029 ORTHO05D000854 1.2e-15 89.4 89 52.8
Sc15g0004850 Simmondsia chinensis HOM05D000029 ORTHO05D000854 1.2e-15 89.4 99 49.5
Cfa013973 Carpinus fangiana HOM05D000029 ORTHO05D000854 1.5e-15 89.0 92 51.1
Gohir.A05G256700 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.5e-15 89.0 218 59.6
THA.LOC104811419 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 1.5e-15 89.0 89 55.1
Sp5g30940 Schrenkiella parvula HOM05D000029 ORTHO05D000854 2.6e-15 88.2 96 52.1
Ah.14g088500 Amaranthus hybridus HOM05D006759 ORTHO05D008633 5.8e-15 87.0 75 53.3
Thhalv10018069m.g Eutrema salsugineum HOM05D000029 ORTHO05D000854 7.5e-15 86.7 96 50.0
Gohir.A02G082800 Gossypium hirsutum HOM05D000029 ORTHO05D000854 7.5e-15 86.7 224 50.4
Gorai.009G269700 Gossypium raimondii HOM05D000029 ORTHO05D000854 7.5e-15 86.7 136 36.8
THA.LOC104813786 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 7.5e-15 86.7 101 50.5
AT1G75820 Arabidopsis thaliana HOM05D000029 ORTHO05D000854 1.3e-14 85.9 104 46.2
QL02p012034 Quercus lobata HOM05D000029 ORTHO05D000854 1.3e-14 85.9 92 50.0
QL02p012056 Quercus lobata HOM05D000029 ORTHO05D000854 1.3e-14 85.9 98 48.0
TWI56G1368 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 2.2e-14 85.1 220 46.8
CSS0031229 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 2.9e-14 84.7 110 50.0
Carub.0002s2267 Capsella rubella HOM05D000029 ORTHO05D000854 3.7e-14 84.3 98 51.0
Aa31LG4G6020 Aethionema arabicum HOM05D000029 ORTHO05D000854 4.9e-14 84.0 92 52.2
Oeu061974.1 Olea europaea HOM05D000029 ORTHO05D000854 4.9e-14 84.0 152 54.6
A07p41350 Brassica napus HOM05D000029 ORTHO05D000854 6.4e-14 83.6 73 54.8
BraA07t31668Z Brassica rapa HOM05D000029 ORTHO05D000854 6.4e-14 83.6 73 54.8
Cfa013974 Carpinus fangiana HOM05D000029 ORTHO05D000854 6.4e-14 83.6 93 54.8
Lj3g0005112 Lotus japonicus HOM05D000029 ORTHO05D000854 8.3e-14 83.2 103 43.7
Nitab4.5_0003349g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 8.3e-14 83.2 106 44.3
TAR625G0714 Trochodendron aralioides HOM05D000029 ORTHO05D000854 8.3e-14 83.2 103 51.5
BcaC08g47071 Brassica carinata HOM05D000029 ORTHO05D008832 1.1e-13 82.8 73 56.2
RcHm_v2.0_Chr6g0303151 Rosa chinensis HOM05D000029 ORTHO05D000854 1.1e-13 82.8 99 49.5
Atru.chr13.260 Acer truncatum HOM05D000029 ORTHO05D000854 1.9e-13 82.0 93 51.6
Prupe.1G363300 Prunus persica HOM05D000029 ORTHO05D000854 1.9e-13 82.0 96 49.0
TAR381G0556 Trochodendron aralioides HOM05D000029 ORTHO05D000854 1.9e-13 82.0 97 49.5
TAR381G0687 Trochodendron aralioides HOM05D000029 ORTHO05D000854 1.9e-13 82.0 97 49.5
Migut.N03171 Erythranthe guttata HOM05D000029 ORTHO05D000854 2.4e-13 81.6 100 54.0
arahy.Tifrunner.gnm1.ann1.8BA7G9 Arachis hypogaea HOM05D000029 ORTHO05D000854 3.2e-13 81.3 103 46.6
arahy.Tifrunner.gnm1.ann1.97EMNK Arachis hypogaea HOM05D000029 ORTHO05D000854 3.2e-13 81.3 103 46.6
Oeu014167.2 Olea europaea HOM05D000029 ORTHO05D000854 3.2e-13 81.3 98 42.9
QL02p012090 Quercus lobata HOM05D000029 ORTHO05D000854 3.2e-13 81.3 97 49.5
VMungo1127G1012 Vigna mungo HOM05D000029 ORTHO05D000854 3.2e-13 81.3 97 42.3
AL2G35810 Arabidopsis lyrata HOM05D000029 ORTHO05D000854 7.1e-13 80.1 104 46.2
PGR031G0445 Punica granatum HOM05D000029 ORTHO05D000854 7.1e-13 80.1 93 53.8
CARHR069240 Cardamine hirsuta HOM05D000029 ORTHO05D000854 9.2e-13 79.7 96 46.9
Hma1.2p1_0733F.1_g210220 Hydrangea macrophylla HOM05D000029 ORTHO05D000854 9.2e-13 79.7 232 38.8
Rhsim11G0137300 Rhododendron simsii HOM05D000029 ORTHO05D000854 9.2e-13 79.7 91 48.4
CSS0021294 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 1.2e-12 79.3 71 54.9
CSS0049239 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 1.2e-12 79.3 71 54.9
Nn5g30753 Nelumbo nucifera HOM05D000029 ORTHO05D000854 1.2e-12 79.3 76 56.6
vmacro04366 Vaccinium macrocarpon HOM05D000029 ORTHO05D000854 1.2e-12 79.3 98 50.0
Lalb_Chr01g0002311 Lupinus albus HOM05D000029 ORTHO05D000854 1.6e-12 79.0 98 42.9
Actinidia00278 Actinidia chinensis HOM05D000029 ORTHO05D000854 2.1e-12 78.6 66 56.1
Dinv31865 Davidia involucrata HOM05D000029 ORTHO05D000854 2.1e-12 78.6 101 50.5
Glyma.11G114200 Glycine max HOM05D000029 ORTHO05D000854 2.1e-12 78.6 88 44.3
Lsat_1_v5_gn_8_30160 Lactuca sativa HOM05D000029 ORTHO05D000854 2.1e-12 78.6 97 45.4
RcHm_v2.0_Chr2g0120661 Rosa chinensis HOM05D000029 ORTHO05D000854 2.1e-12 78.6 169 52.7
BcaC08g47324 Brassica carinata HOM05D000029 ORTHO05D000854 3.5e-12 77.8 108 43.5
C06p49770 Brassica napus HOM05D000029 ORTHO05D000854 3.5e-12 77.8 108 43.5
BolC6t40016H Brassica oleracea HOM05D000029 ORTHO05D000854 3.5e-12 77.8 108 43.5
ClCG05G018180 Citrullus lanatus HOM05D000029 ORTHO05D000854 3.5e-12 77.8 89 47.2
FAN27G2151 Fragaria x ananassa HOM05D000029 ORTHO05D000854 3.5e-12 77.8 99 47.5
FvH4_2g38230 Fragaria vesca HOM05D000029 ORTHO05D000854 4.6e-12 77.4 99 47.5
Nn6g32016 Nelumbo nucifera HOM05D000029 ORTHO05D000854 6.0e-12 77.0 76 52.6
FAN15G2748 Fragaria x ananassa HOM05D000029 ORTHO05D000854 7.8e-12 76.6 99 47.5
PGSC0003DMG400009941 Solanum tuberosum HOM05D000029 ORTHO05D000854 1.0e-11 76.3 92 43.5
Cpa.g.sc26.309 Carica papaya HOM05D000029 ORTHO05D000854 1.3e-11 75.9 96 46.9
Lalb_Chr03g0025491 Lupinus albus HOM05D000029 ORTHO05D000854 1.3e-11 75.9 99 40.4
SGA_v2.0_scaffold19G08549 Striga asiatica HOM05D000029 ORTHO05D000854 1.3e-11 75.9 100 49.0
MELO3C003743.2 Cucumis melo HOM05D000029 ORTHO05D000854 1.7e-11 75.5 93 45.2
Glyma.11G114100 Glycine max HOM05D000029 ORTHO05D000854 1.7e-11 75.5 98 41.8
FAN20G1462 Fragaria x ananassa HOM05D000029 ORTHO05D000854 2.3e-11 75.1 99 47.5
Lsat_1_v5_gn_8_30001 Lactuca sativa HOM05D000029 ORTHO05D000854 2.3e-11 75.1 226 54.0
PSO675G7340 Papaver somniferum HOM05D000029 ORTHO05D000854 2.3e-11 75.1 103 39.8
Phvul.011G042000 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 2.3e-11 75.1 97 40.2
RcHm_v2.0_Chr2g0119001 Rosa chinensis HOM05D000029 ORTHO05D000854 5.1e-11 73.9 99 48.5
CAN.G311.45 Capsicum annuum HOM05D000029 ORTHO05D000854 6.6e-11 73.6 103 41.7
Peaxi162Scf00553g00620 Petunia axillaris HOM05D000029 ORTHO05D000854 6.6e-11 73.6 96 45.8
Sed0018613 Sechium edule HOM05D000029 ORTHO05D000854 6.6e-11 73.6 104 42.3
Ciclev10003935m.g Citrus clementina HOM05D000029 ORTHO05D000854 8.6e-11 73.2 53 62.3
CsaV3_3G045960 Cucumis sativus L. HOM05D000029 ORTHO05D000854 8.6e-11 73.2 93 44.1
DCAR_014030 Daucus carota HOM05D000029 ORTHO05D008832 8.6e-11 73.2 75 49.3
PSO541G5153 Papaver somniferum HOM05D000029 ORTHO05D000854 1.1e-10 72.8 103 38.8
Phvul.011G042100 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 1.1e-10 72.8 97 40.2
Solyc04g081590.4 Solanum lycopersicum HOM05D000029 ORTHO05D000854 1.1e-10 72.8 93 41.9
Eucgr.H00964 Eucalyptus grandis HOM05D000029 ORTHO05D000854 1.5e-10 72.4 95 48.4
Glyma.12G040000 Glycine max HOM05D000029 ORTHO05D000854 1.5e-10 72.4 94 39.4
HanXRQChr12g0366831 Helianthus annuus HOM05D000029 ORTHO05D000854 1.5e-10 72.4 97 43.3
RcHm_v2.0_Chr2g0119031 Rosa chinensis HOM05D000029 ORTHO05D000854 1.5e-10 72.4 99 49.5
Sabra02G0016200 Salix brachista HOM05D000029 ORTHO05D000854 1.5e-10 72.4 87 50.6
CANSAT25G3014 Cannabis sativa HOM05D000029 ORTHO05D000854 1.9e-10 72.0 97 45.4
Lj4C21T5 Lonicera japonica HOM05D000029 ORTHO05D000854 1.9e-10 72.0 62 54.8
Lj4C798T10 Lonicera japonica HOM05D000029 ORTHO05D000854 1.9e-10 72.0 107 43.9
Potri.005G241500 Populus trichocarpa HOM05D000029 ORTHO05D000854 1.9e-10 72.0 88 51.1
Potri.002G019900 Populus trichocarpa HOM05D000029 ORTHO05D000854 4.3e-10 70.9 92 48.9
Rhsim07G0250600 Rhododendron simsii HOM05D000029 ORTHO05D000854 5.6e-10 70.5 92 44.6
Ca_20907_v3 Cicer arietinum L. HOM05D000029 ORTHO05D000854 7.3e-10 70.1 94 39.4
Manes.11G162200 Manihot esculenta HOM05D000029 ORTHO05D000854 7.3e-10 70.1 102 44.1
Medtr4g070950 Medicago truncatula HOM05D000029 ORTHO05D000854 7.3e-10 70.1 100 38.0
Psat7g183240 Pisum sativum HOM05D000029 ORTHO05D000854 7.3e-10 70.1 93 43.0
HanXRQChr14g0431061 Helianthus annuus HOM05D000029 ORTHO05D000854 9.5e-10 69.7 103 39.8
Sabra05G0187000 Salix brachista HOM05D000029 ORTHO05D013250 1.2e-09 69.3 92 50.0
MD08G1010700 Malus domestica HOM05D000029 ORTHO05D000854 1.6e-09 68.9 89 50.6
Sopen04g035200 Solanum pennellii HOM05D000029 ORTHO05D000854 1.6e-09 68.9 60 51.7
Aqoxy6G02186 Aquilegia oxysepala HOM05D000029 ORTHO05D000854 2.1e-09 68.6 102 42.2
Manes.05G145600 Manihot esculenta HOM05D000029 ORTHO05D000854 2.1e-09 68.6 229 44.1
ECA238G3421 Erigeron canadensis HOM05D000029 ORTHO05D000854 2.8e-09 68.2 99 40.4
Migut.C00856 Erythranthe guttata HOM05D000029 ORTHO05D000854 2.8e-09 68.2 102 39.2
MD15G1010800 Malus domestica HOM05D000029 ORTHO05D000854 3.6e-09 67.8 95 48.4
TPR.G30515 Trifolium pratense HOM05D000029 ORTHO05D000854 3.6e-09 67.8 92 37.0
SEGI_28524 Sequoiadendron giganteum HOM05D000029 ORTHO05D000854 6.2e-09 67.0 79 43.0
DCAR_022991 Daucus carota HOM05D000029 ORTHO05D000854 8.1e-09 66.6 79 43.0
HPP92_008346 Vanilla planifolia HOM05D000029 ORTHO05D000854 8.1e-09 66.6 93 48.4
CiPaw.07G147700 Carya illinoinensis HOM05D000029 ORTHO05D008832 1.4e-08 65.9 52 61.5
Hund05177 Selenicereus undatus HOM05D000029 ORTHO05D000854 1.8e-08 65.5 108 42.6
ECA238G2525 Erigeron canadensis HOM05D000029 ORTHO05D000854 2.4e-08 65.1 105 41.9
GSVIVG01009941001 Vitis vinifera HOM05D000029 ORTHO05D000854 2.4e-08 65.1 96 44.8
SGA_v2.0_scaffold92G28209 Striga asiatica HOM05D000029 ORTHO05D000854 3.1e-08 64.7 93 44.1
AUR62041480 Chenopodium quinoa HOM05D000029 ORTHO05D000854 4.0e-08 64.3 97 39.2
Gohir.D05G258350 Gossypium hirsutum HOM05D000029 ORTHO05D000854 4.0e-08 64.3 56 50.0
SalBow7G3307 Salvia bowleyana HOM05D000029 ORTHO05D000854 4.0e-08 64.3 89 44.9
SalBow8G4622 Salvia bowleyana HOM05D000029 ORTHO05D000854 4.0e-08 64.3 91 35.2
Prupe.6G163000 Prunus persica HOM05D000029 ORTHO05D000854 6.8e-08 63.5 93 46.2
MBI09_g22807_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D000854 1.5e-07 62.4 99 41.4
Medtr4g070970 Medicago truncatula HOM05D000029 ORTHO05D000854 2.6e-07 61.6 62 45.2
Ah.11g039930 Amaranthus hybridus HOM05D000029 ORTHO05D000854 3.4e-07 61.2 107 35.5
AUR62040553 Chenopodium quinoa HOM05D000029 ORTHO05D000854 5.8e-07 60.5 75 42.7
Lsat_1_v5_gn_2_12620 Lactuca sativa HOM05D000029 ORTHO05D000854 5.8e-07 60.5 78 44.9
ECA238G1034 Erigeron canadensis HOM05D000029 ORTHO05D000854 7.6e-07 60.1 65 47.7
Sp4g27380 Schrenkiella parvula HOM05D001592 ORTHO05D001533 7.6e-07 60.1 101 39.6
EL10Ac3g05538 Beta vulgaris HOM05D000029 ORTHO05D000854 1.3e-06 59.3 98 36.7
Cc10_g01470 Coffea canephora HOM05D000029 ORTHO05D000854 2.2e-06 58.5 112 65.2
Os06g0717200 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D000854 2.9e-06 58.2 79 40.5
ECA238G2013 Erigeron canadensis HOM05D000029 ORTHO05D000854 4.9e-06 57.4 44 59.1
CDE02G0257 Ceratophyllum demersum HOM05D000029 ORTHO05D000854 6.4e-06 57.0 67 46.3
Atru.chr13.263 Acer truncatum HOM05D000029 ORTHO05D000854 8.4e-06 56.6 46 56.5
BcaB02g08971 Brassica carinata HOM05D001592 ORTHO05D001533 8.4e-06 56.6 96 37.5


User provided reference genes

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