Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.2e-71 273.1 135 100.0
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 9.8e-71 270.0 135 99.3
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 5.8e-55 217.6 138 78.3
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 1.7e-54 216.1 139 78.4
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 4.1e-53 211.5 132 76.5
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 7.0e-53 210.7 127 78.7
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 7.0e-53 210.7 133 75.2
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 2.7e-52 208.8 130 77.7
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 4.6e-52 208.0 133 75.9
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 7.8e-52 207.2 132 74.2
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 1.0e-51 206.8 126 79.4
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 1.7e-51 206.1 134 73.1
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 6.6e-51 204.1 135 71.9
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 6.6e-51 204.1 129 75.2
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 8.6e-51 203.8 130 74.6
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 8.6e-51 203.8 134 71.6
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 1.1e-50 203.4 127 75.6
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 1.1e-50 203.4 130 75.4
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 1.9e-50 202.6 135 71.1
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 3.3e-50 201.8 130 76.2
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 4.3e-50 201.4 127 71.7
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 7.3e-50 200.7 130 73.8
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 2.1e-49 199.1 124 73.4
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 4.7e-49 198.0 134 70.9
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 4.7e-49 198.0 134 70.9
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 6.2e-49 197.6 135 68.9
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 8.1e-49 197.2 132 69.7
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 8.1e-49 197.2 145 68.3
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 1.1e-48 196.8 127 72.4
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 1.1e-48 196.8 127 73.2
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 1.4e-48 196.4 130 73.1
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 1.8e-48 196.1 127 72.4
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 1.8e-48 196.1 127 75.6
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 1.8e-48 196.1 127 69.3
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 1.8e-48 196.1 127 71.7
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 2.3e-48 195.7 134 67.2
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 3.1e-48 195.3 134 70.1
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 4.0e-48 194.9 131 74.0
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 4.0e-48 194.9 129 73.6
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 1.2e-47 193.4 133 71.4
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 1.2e-47 193.4 132 72.7
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 2.6e-47 192.2 123 70.7
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 3.4e-47 191.8 132 71.2
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 4.4e-47 191.4 130 71.5
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 5.8e-47 191.0 125 72.0
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 7.5e-47 190.7 135 70.4
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 9.8e-47 190.3 132 72.0
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 1.3e-46 189.9 133 69.2
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 1.3e-46 189.9 135 70.4
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 1.7e-46 189.5 132 71.2
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 2.2e-46 189.1 132 70.5
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 3.7e-46 188.3 105 82.9
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 6.4e-46 187.6 127 70.1
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 6.4e-46 187.6 132 69.7
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 8.3e-46 187.2 132 72.0
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 8.3e-46 187.2 166 58.4
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 3.2e-45 185.3 138 67.4
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 3.2e-45 185.3 138 67.4
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 7.1e-45 184.1 134 68.7
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 7.1e-45 184.1 135 67.4
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.6e-44 183.0 129 71.3
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 2.7e-44 182.2 132 67.4
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 2.7e-44 182.2 138 65.9
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 3.5e-44 181.8 127 70.1
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 7.8e-44 180.6 128 68.8
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 7.8e-44 180.6 138 68.1
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 1.0e-43 180.3 138 65.2
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 1.0e-43 180.3 138 65.2
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 1.0e-43 180.3 128 68.8
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 1.3e-43 179.9 138 64.5
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 2.3e-43 179.1 105 77.1
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 3.9e-43 178.3 128 68.8
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 3.9e-43 178.3 135 65.2
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 3.9e-43 178.3 135 65.2
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 5.1e-43 177.9 136 64.0
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 6.6e-43 177.6 135 65.2
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 2.5e-42 175.6 135 63.7
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 2.5e-42 175.6 107 79.4
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 3.3e-42 175.3 105 76.2
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 4.3e-42 174.9 131 67.2
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 9.5e-42 173.7 105 75.2
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 1.6e-41 172.9 135 64.4
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 2.8e-41 172.2 105 75.2
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 8.1e-41 170.6 107 74.8
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 1.1e-40 170.2 135 63.7
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 1.1e-40 170.2 105 73.3
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.2e-39 166.8 112 71.4
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 2.0e-39 166.0 132 61.4
DCAR_011285 Daucus carota HOM05D006998 ORTHO05D008733 2.9e-30 135.6 130 53.1
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 4.9e-30 134.8 131 53.4
Dinv25701 Davidia involucrata HOM05D006998 ORTHO05D008733 3.2e-29 132.1 70 82.9
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 5.4e-29 131.3 89 71.9
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 1.6e-28 129.8 103 58.3
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 2.7e-28 129.0 95 63.2
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 3.5e-28 128.6 99 66.7
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 1.9e-26 122.9 134 49.3
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 8.1e-25 117.5 87 70.1
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 8.1e-25 117.5 87 67.8
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 8.1e-25 117.5 122 57.4
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 8.1e-25 117.5 122 57.4
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 1.1e-24 117.1 83 68.7
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 4.5e-23 111.7 87 65.5
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 5.8e-23 111.3 88 67.0
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 1.3e-22 110.2 84 67.9
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 8.4e-22 107.5 91 61.5
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 3.2e-21 105.5 95 50.5
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 7.1e-21 104.4 88 62.5
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 1.6e-20 103.2 90 60.0
Sed0022519 Sechium edule HOM05D006998 ORTHO05D008733 5.8e-15 84.7 47 72.3
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 1.7e-14 83.2 59 67.8
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 1.1e-13 80.5 86 50.0
BcaB01g01217 Brassica carinata HOM05D006998 ORTHO05D008733 7.1e-13 77.8 71 56.3
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 9.3e-13 77.4 58 62.1
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 2.3e-11 72.8 66 59.1
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 2.3e-11 72.8 67 56.7
Cre09.g413300 Chlamydomonas reinhardtii HOM05D006998 ORTHO05D008733 1.5e-10 70.1 60 50.0
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 2.1e-09 66.2 87 44.8
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 2.8e-09 65.9 107 43.0
Pp3c11_10070 Physcomitrium patens HOM05D006998 ORTHO05D008733 1.3e-06 57.0 37 62.2


User provided reference genes

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