Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 2225.3 1175 100.0
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1957.6 1175 85.4
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1954.5 1175 86.6
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1933.3 1174 84.4
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1932.9 1175 85.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1929.8 1174 84.9
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1927.1 1177 85.5
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1922.1 1176 82.7
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1921.7 1176 86.6
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1921.7 1174 84.6
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1920.6 1175 83.2
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1173 85.3
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1917.9 1174 84.1
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1916.4 1175 84.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1916.0 1177 84.2
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1915.2 1173 85.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1914.0 1174 83.4
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1912.1 1171 84.1
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1175 85.0
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1174 83.0
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1174 83.0
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1910.6 1176 82.2
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1910.2 1176 83.9
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1909.8 1177 83.8
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1909.4 1175 82.4
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1173 83.1
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1907.1 1175 84.7
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1905.6 1178 83.5
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1905.6 1176 83.1
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1904.0 1178 84.5
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1902.9 1174 84.0
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1901.7 1176 82.5
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1901.3 1175 83.6
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1900.9 1220 80.2
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1171 84.5
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1175 84.5
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1899.4 1180 85.2
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1898.6 1177 83.2
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1898.6 1176 83.8
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1897.5 1177 83.9
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1897.5 1176 83.1
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1896.7 1174 84.0
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1896.3 1174 83.9
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1894.8 1177 83.9
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1890.5 1174 83.7
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1886.7 1175 82.9
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1886.3 1175 83.4
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1886.3 1174 82.5
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1885.5 1091 86.2
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1884.0 1174 82.3
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1884.0 1174 82.9
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1882.8 1175 82.5
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1881.7 1176 82.7
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1880.5 1177 83.1
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1880.5 1171 82.7
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1878.6 1174 82.3
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1876.3 1187 82.0
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1875.5 1175 83.5
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1873.6 1203 82.5
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1870.5 1174 81.5
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1870.1 1175 82.3
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1869.0 1174 83.0
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1867.4 1175 82.8
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1866.3 1175 82.0
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1866.3 1172 82.9
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1863.6 1175 79.8
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1860.5 1174 83.5
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1855.5 1174 81.7
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1855.5 1182 82.2
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1853.2 1176 82.9
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1852.8 1218 80.2
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1852.0 1171 82.2
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1851.3 1172 82.0
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1850.1 1171 82.1
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1848.6 1172 82.1
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1846.6 1177 82.0
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1843.9 1209 79.7
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1843.6 1173 81.7
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1840.9 1172 82.0
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1840.9 1172 82.0
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1840.5 1172 81.4
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1840.1 1172 81.1
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1835.5 1182 81.5
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1834.7 1172 81.2
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1822.4 1094 82.9
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1818.5 1167 81.4
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1813.9 1090 82.7
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1799.6 1052 86.4
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1760.7 1340 71.3
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1758.0 1201 78.6
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1752.3 1191 76.3
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1752.3 1175 74.9
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1722.6 1179 73.5
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1679.8 1179 73.5
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1674.1 1179 73.9
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1612.0 1176 69.2
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1597.8 1177 69.0
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1581.6 1004 81.6
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1548.1 1162 73.1
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1529.2 951 82.9
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1438.3 1173 63.4
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1431.0 1176 61.4
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1429.8 848 85.3
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1382.1 1173 60.8
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1376.3 839 82.5
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1373.2 1173 60.6
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1362.4 1190 60.1
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1331.6 799 84.1
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1272.3 797 79.8
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1194.1 798 75.3
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1123.2 695 82.9
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1094.0 929 59.6
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 1.5e-305 1053.1 1108 48.7
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 5.7e-300 1034.6 744 74.2
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 4.2e-287 991.9 577 87.3
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.0e-285 987.3 600 85.2
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.6e-284 982.6 664 77.1
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 9.8e-268 927.5 547 85.2
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.1e-266 924.1 518 87.3
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.5e-263 912.9 599 78.5
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.9e-255 886.7 626 72.0
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 6.7e-216 755.4 470 78.9
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 2.1e-209 733.8 490 78.8
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 2.7e-201 706.8 396 86.9
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.2e-148 531.9 358 77.9
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.1e-144 518.8 354 79.9
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 4.6e-116 423.7 378 57.7
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 3.0e-107 394.4 290 68.3
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 5.3e-88 330.5 195 85.1
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.6e-60 239.2 166 75.9
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.0e-46 193.4 143 73.4
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.8e-44 185.3 117 82.9
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 5.6e-37 161.0 103 81.6
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 2.8e-36 158.7 109 77.1
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 2.8e-36 158.7 87 85.1
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 5.2e-35 154.5 78 92.3
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 4.1e-32 144.8 96 78.1
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 8.9e-19 100.5 83 66.3
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.2e-17 95.9 82 58.5
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.8e-17 95.1 82 58.5
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 9.6e-13 80.5 51 74.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.8e-12 79.0 51 72.5
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 3.6e-12 78.6 51 74.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 1.5e-10 73.2 111 61.3
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 2.7e-07 62.4 245 28.2
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 6.6e-06 57.8 57 52.6


User provided reference genes

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