Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 2.0e-305 1051.6 530 100.0
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 5.1e-224 781.2 514 74.1
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 3.3e-223 778.5 522 73.6
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 5.7e-223 777.7 509 74.9
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 6.3e-222 774.2 519 72.4
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 1.3e-219 766.5 507 73.8
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 5.0e-219 764.6 508 75.4
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 4.2e-218 761.5 522 71.5
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 9.4e-218 760.4 513 71.9
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.7e-217 758.8 474 75.1
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 6.1e-217 757.7 511 72.6
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 1.0e-216 756.9 462 77.3
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 5.1e-216 754.6 522 70.5
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 5.1e-216 754.6 462 77.1
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 2.6e-215 752.3 509 71.5
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 5.7e-215 751.1 522 70.7
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 2.2e-214 749.2 523 71.9
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 4.5e-212 741.5 474 73.4
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 7.7e-212 740.7 519 69.9
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 5.0e-211 738.0 522 70.1
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 6.5e-211 737.6 473 73.2
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 1.1e-210 736.9 509 69.7
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 1.4e-210 736.5 505 72.5
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 3.2e-210 735.3 463 73.9
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 1.2e-209 733.4 521 71.2
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 2.7e-209 732.3 481 72.8
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 4.7e-209 731.5 506 70.4
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 1.0e-208 730.3 515 69.1
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 1.0e-208 730.3 530 67.4
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 1.8e-208 729.6 470 72.8
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 1.8e-208 729.6 455 74.7
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.0e-208 728.8 522 68.8
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 6.7e-208 727.6 522 70.7
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 7.4e-207 724.2 437 76.0
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 2.2e-206 722.6 507 67.9
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 2.8e-206 722.2 463 74.7
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 2.8e-206 722.2 504 67.7
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 4.8e-206 721.5 463 74.5
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 6.3e-206 721.1 523 67.9
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.4e-205 719.9 522 71.5
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 1.8e-205 719.5 493 70.8
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 3.1e-205 718.8 455 73.8
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.1e-205 718.8 532 66.5
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 4.1e-205 718.4 532 67.9
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 7.0e-205 717.6 463 73.7
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 1.2e-204 716.8 450 75.3
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.6e-204 716.5 460 72.0
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 7.7e-204 714.1 517 68.1
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.0e-203 713.8 494 69.8
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 2.2e-203 712.6 522 66.9
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 3.8e-203 711.8 524 66.8
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.5e-202 709.9 540 67.2
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.2e-201 706.8 470 70.9
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 3.6e-201 705.3 519 66.5
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 4.7e-201 704.9 518 66.6
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.4e-200 703.4 520 66.7
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 2.3e-200 702.6 488 68.0
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 3.0e-200 702.2 451 72.1
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 4.0e-200 701.8 474 70.0
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 5.2e-200 701.4 508 67.1
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 8.8e-200 700.7 481 69.4
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 1.2e-199 700.3 476 71.2
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 9.7e-199 697.2 462 70.8
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 3.1e-197 692.2 491 68.4
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 3.1e-197 692.2 487 68.8
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 9.1e-197 690.6 467 70.4
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 2.0e-196 689.5 487 68.8
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 3.5e-196 688.7 511 66.9
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 2.2e-195 686.0 518 66.0
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.9e-195 685.6 527 66.2
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 6.5e-195 684.5 506 69.8
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 4.2e-194 681.8 540 62.8
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 2.7e-193 679.1 521 64.7
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.8e-192 676.4 532 64.7
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 1.2e-191 673.7 537 63.5
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.3e-190 670.2 449 71.7
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 2.2e-190 669.5 467 67.9
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 2.7e-185 652.5 482 66.0
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 6.3e-182 641.3 413 74.8
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 9.2e-181 637.5 509 62.3
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 2.9e-179 632.5 470 63.6
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.8e-177 625.9 475 65.7
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 2.8e-177 625.9 464 67.9
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 4.9e-174 615.1 444 64.4
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 4.1e-173 612.1 404 71.3
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 2.0e-172 609.8 486 61.7
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 2.4e-165 586.3 522 57.1
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 4.4e-151 538.9 520 57.1
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 1.1e-149 534.3 462 55.4
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 7.1e-149 531.6 458 55.5
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 2.7e-148 529.6 336 75.0
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 8.4e-142 508.1 320 75.3
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.5e-140 502.7 314 74.8
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.3e-139 500.0 371 66.8
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 2.3e-139 500.0 443 53.0
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 4.0e-136 489.2 411 61.6
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.2e-127 461.1 340 67.6
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.2e-117 426.4 271 76.0
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 7.1e-117 425.2 405 50.9
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 2.1e-116 423.7 300 64.7
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 1.9e-106 390.6 404 48.5
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 1.1e-104 384.8 298 66.4
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 5.9e-103 379.0 388 53.4
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 1.1e-96 358.2 530 42.8
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 8.5e-94 348.6 256 66.8
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 2.5e-85 320.5 290 58.3
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 1.2e-79 301.6 216 66.7
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 3.8e-78 296.6 226 63.7
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 2.0e-66 257.7 496 32.9
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 7.8e-55 219.2 126 76.2
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 6.6e-38 162.9 107 64.5
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 2.5e-37 161.0 446 30.3
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 1.8e-27 128.3 91 68.1
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 4.4e-26 123.6 88 65.9
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 4.9e-25 120.2 378 26.5
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.1e-24 119.0 87 67.8
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.6e-23 115.2 365 27.4
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 3.1e-19 100.9 73 58.9
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.0e-18 98.2 65 67.7
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 7.6e-18 96.3 70 68.6
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.2e-17 94.7 179 30.2
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 2.1e-15 88.2 94 46.8
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.5e-13 82.0 87 51.7
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.4e-10 70.9 78 51.3
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 7.6e-10 69.7 32 87.5
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 3.8e-09 67.4 80 43.8
PGR102G1400 Punica granatum HOM05D005216 ORTHO05D006453 6.0e-07 60.1 263 25.1
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 2.3e-06 58.2 36 63.9
Cc04_g02310 Coffea canephora HOM05D005216 ORTHO05D006453 8.7e-06 56.2 295 23.7


User provided reference genes

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