Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 7.3e-144 513.8 255 100.0
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 5.9e-93 344.7 238 70.6
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 2.9e-92 342.4 251 66.9
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 3.8e-92 342.0 236 69.5
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 1.5e-91 340.1 238 69.7
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 5.5e-91 338.2 240 70.0
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 9.4e-91 337.4 236 69.5
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 1.6e-90 336.7 248 67.3
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 2.1e-90 336.3 255 63.9
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 4.7e-90 335.1 249 65.9
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 1.4e-89 333.6 256 63.7
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 4.0e-89 332.0 250 66.4
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 4.0e-89 332.0 238 69.3
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 8.8e-89 330.9 249 66.3
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.2e-88 330.5 237 69.2
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 2.0e-88 329.7 239 68.6
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 2.0e-88 329.7 235 67.7
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 3.4e-88 328.9 259 64.9
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 7.5e-88 327.8 231 70.1
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 9.7e-88 327.4 242 68.2
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 9.7e-88 327.4 239 66.5
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 9.7e-88 327.4 253 65.2
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.7e-87 326.6 233 69.1
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 2.2e-87 326.2 239 69.0
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 4.8e-87 325.1 250 65.2
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 8.3e-87 324.3 256 61.7
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 1.1e-86 323.9 239 66.1
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 2.4e-86 322.8 239 65.7
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 3.1e-86 322.4 243 65.0
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 3.1e-86 322.4 250 64.8
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 9.1e-86 320.9 243 66.7
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 2.0e-85 319.7 236 66.9
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 4.5e-85 318.5 237 65.8
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 7.7e-85 317.8 238 65.1
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 1.0e-84 317.4 248 64.1
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.9e-84 315.8 229 69.0
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 3.8e-84 315.5 235 66.0
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 5.0e-84 315.1 229 68.6
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 6.5e-84 314.7 238 66.8
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 6.5e-84 314.7 258 64.3
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 6.5e-84 314.7 258 64.3
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 8.5e-84 314.3 259 62.9
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 1.1e-83 313.9 229 67.7
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 1.1e-83 313.9 277 59.9
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 3.2e-83 312.4 259 62.9
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 4.2e-83 312.0 242 63.2
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 4.2e-83 312.0 259 62.2
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 7.2e-83 311.2 229 69.4
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 9.4e-83 310.8 242 64.0
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 1.2e-82 310.5 281 57.3
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 1.6e-82 310.1 256 62.9
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 2.1e-82 309.7 236 66.9
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 2.7e-82 309.3 241 63.5
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 3.6e-82 308.9 242 63.6
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 4.7e-82 308.5 252 63.5
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 6.1e-82 308.1 239 65.7
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 1.4e-81 307.0 244 63.9
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 2.3e-81 306.2 239 64.0
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 5.2e-81 305.1 244 63.9
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 6.8e-81 304.7 250 60.4
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 8.8e-81 304.3 237 62.9
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 1.2e-80 303.9 245 63.3
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 1.2e-80 303.9 245 63.3
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 1.2e-80 303.9 249 61.4
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 1.5e-80 303.5 231 66.7
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.5e-80 303.5 250 59.6
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 1.5e-80 303.5 248 63.3
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 2.0e-80 303.1 245 61.6
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 5.7e-80 301.6 247 60.3
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 9.8e-80 300.8 273 59.0
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 1.3e-79 300.4 256 59.4
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 1.3e-79 300.4 244 63.1
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 2.2e-79 299.7 272 58.5
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 2.2e-79 299.7 271 57.6
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.8e-79 299.3 272 58.5
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 1.1e-78 297.4 241 62.7
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 1.1e-78 297.4 250 61.2
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.4e-78 297.0 245 62.4
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 2.4e-78 296.2 232 61.6
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 3.1e-78 295.8 237 60.8
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 3.1e-78 295.8 237 61.2
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 7.0e-78 294.7 256 60.9
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 1.6e-77 293.5 237 60.3
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 2.7e-77 292.7 280 56.4
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 8.6e-76 287.7 265 56.6
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 8.6e-76 287.7 223 66.8
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 1.1e-75 287.3 250 59.6
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 4.7e-74 282.0 255 57.6
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 1.4e-73 280.4 243 61.3
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 3.0e-73 279.3 271 54.2
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 1.2e-72 277.3 253 59.3
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 2.2e-71 273.1 276 52.2
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 2.0e-69 266.5 248 56.0
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 2.9e-68 262.7 234 54.7
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 9.5e-67 257.7 233 60.1
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 8.9e-65 251.1 245 55.5
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 8.3e-63 244.6 186 65.6
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 7.3e-59 231.5 176 68.2
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 4.9e-55 218.8 224 53.1
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 1.2e-50 204.1 261 44.1
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 1.8e-49 200.3 279 41.6
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 2.1e-42 176.8 119 68.9
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 3.6e-42 176.0 262 41.6
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 4.7e-42 175.6 247 45.7
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 1.1e-41 174.5 180 47.2
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 1.1e-41 174.5 118 66.1
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 3.9e-36 156.0 239 40.6
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 5.4e-30 135.6 120 55.0
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 1.6e-29 134.0 126 57.9
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 8.1e-26 121.7 152 46.7
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 1.8e-20 104.0 140 37.1
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 2.8e-18 96.7 106 55.7
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 9.3e-14 81.6 122 39.3
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.0e-07 61.6 49 61.2
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 8.4e-07 58.5 34 70.6
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.5e-06 57.0 46 52.2
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 3.2e-06 56.6 130 36.9
Actinidia36204 Actinidia chinensis HOM05D006878 ORTHO05D008579 4.2e-06 56.2 56 55.4


User provided reference genes

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