Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0006070 Simmondsia chinensis HOM05D004517 ORTHO05D005366 4.5e-56 221.1 117 100.0
Sc03g0005930 Simmondsia chinensis HOM05D004517 ORTHO05D005366 2.2e-34 149.1 95 81.1
Ah.03g137090 Amaranthus hybridus HOM05D004517 ORTHO05D005366 1.5e-14 83.2 91 52.7
CSS0006387 Camellia sinensis var. sinensis HOM05D004517 ORTHO05D005366 1.1e-12 77.0 88 52.3
CSS0045081 Camellia sinensis var. sinensis HOM05D004517 ORTHO05D005366 1.1e-12 77.0 88 52.3
Cc02_g22420 Coffea canephora HOM05D004517 ORTHO05D005366 4.0e-12 75.1 76 53.9
AUR62042719 Chenopodium quinoa HOM05D004517 ORTHO05D005366 5.2e-12 74.7 94 50.0
AUR62014267 Chenopodium quinoa HOM05D004517 ORTHO05D005366 8.9e-12 73.9 80 55.0
EL10Ac6g14070 Beta vulgaris HOM05D004517 ORTHO05D005366 1.5e-11 73.2 91 46.2
MSTRG.16525 Avicennia marina HOM05D004517 ORTHO05D005366 4.4e-11 71.6 107 45.8
TAR628G0747 Trochodendron aralioides HOM05D004517 ORTHO05D005366 9.9e-11 70.5 70 60.0
CsaV3_6G037380 Cucumis sativus L. HOM05D004517 ORTHO05D005366 2.2e-10 69.3 97 44.3
Nitab4.5_0002245g0100 Nicotiana tabacum HOM05D004517 ORTHO05D005366 2.2e-10 69.3 94 46.8
Peaxi162Scf00011g00362 Petunia axillaris HOM05D004517 ORTHO05D005366 2.2e-10 69.3 97 47.4
Manes.10G130100 Manihot esculenta HOM05D004517 ORTHO05D005366 2.9e-10 68.9 100 41.0
Oeu008886.2 Olea europaea HOM05D004517 ORTHO05D005366 2.9e-10 68.9 93 51.6
Nitab4.5_0011195g0020 Nicotiana tabacum HOM05D004517 ORTHO05D005366 3.7e-10 68.6 95 49.5
Manes.07G015100 Manihot esculenta HOM05D004517 ORTHO05D005366 4.9e-10 68.2 96 41.7
HanXRQChr06g0185081 Helianthus annuus HOM05D004517 ORTHO05D005366 1.1e-09 67.0 78 50.0
PSO170G6572 Papaver somniferum HOM05D004517 ORTHO05D005366 1.1e-09 67.0 81 44.4
PSO782G4069 Papaver somniferum HOM05D004517 ORTHO05D005366 1.1e-09 67.0 81 44.4
Cpa.g.sc113.67 Carica papaya HOM05D004517 ORTHO05D005366 1.9e-09 66.2 77 46.8
Gohir.D02G232900 Gossypium hirsutum HOM05D004517 ORTHO05D005366 2.4e-09 65.9 94 43.6
Gorai.005G260700 Gossypium raimondii HOM05D004517 ORTHO05D005366 2.4e-09 65.9 94 43.6
MD15G1422000 Malus domestica HOM05D004517 ORTHO05D005366 2.4e-09 65.9 89 43.8
Sopen10g015980 Solanum pennellii HOM05D004517 ORTHO05D005366 2.4e-09 65.9 78 52.6
HanXRQChr03g0066801 Helianthus annuus HOM05D004517 ORTHO05D005366 3.2e-09 65.5 78 48.7
Nitab4.5_0001706g0060 Nicotiana tabacum HOM05D004517 ORTHO05D005366 3.2e-09 65.5 75 53.3
Oeu012748.1 Olea europaea HOM05D004517 ORTHO05D005366 3.2e-09 65.5 94 51.1
Nitab4.5_0010875g0020 Nicotiana tabacum HOM05D004517 ORTHO05D005366 4.1e-09 65.1 70 54.3
Solyc10g045630.2 Solanum lycopersicum HOM05D004517 ORTHO05D005366 4.1e-09 65.1 78 48.7
Potri.001G210500 Populus trichocarpa HOM05D004517 ORTHO05D005366 5.4e-09 64.7 79 45.6
arahy.Tifrunner.gnm1.ann1.57R94V Arachis hypogaea HOM05D004517 ORTHO05D005366 7.1e-09 64.3 76 48.7
arahy.Tifrunner.gnm1.ann1.RA8HQM Arachis hypogaea HOM05D004517 ORTHO05D005366 7.1e-09 64.3 76 48.7
Gohir.A03G211300 Gossypium hirsutum HOM05D004517 ORTHO05D005366 7.1e-09 64.3 92 42.4
Hma1.2p1_0179F.1_g079410 Hydrangea macrophylla HOM05D004517 ORTHO05D005366 7.1e-09 64.3 82 50.0
MD08G1228000 Malus domestica HOM05D004517 ORTHO05D005366 7.1e-09 64.3 85 43.5
Lalb_Chr13g0295731 Lupinus albus HOM05D004517 ORTHO05D005366 9.2e-09 63.9 85 45.9
SalBow5G4543 Salvia bowleyana HOM05D004517 ORTHO05D005366 9.2e-09 63.9 76 47.4
COL.COLO4_17875 Corchorus olitorius HOM05D004517 ORTHO05D005366 1.2e-08 63.5 90 38.9
Lalb_Chr07g0185721 Lupinus albus HOM05D004517 ORTHO05D005366 1.2e-08 63.5 83 44.6
PGR142G2391 Punica granatum HOM05D004517 ORTHO05D005366 1.2e-08 63.5 83 48.2
THA.LOC104803318 Tarenaya hassleriana HOM05D004517 ORTHO05D005366 1.2e-08 63.5 96 39.6
unitig_578.g16342 Utricularia gibba HOM05D004517 ORTHO05D005366 1.2e-08 63.5 83 44.6
Gorai.008G041900 Gossypium raimondii HOM05D004517 ORTHO05D005366 1.6e-08 63.2 92 39.1
RcHm_v2.0_Chr7g0222671 Rosa chinensis HOM05D004517 ORTHO05D005366 1.6e-08 63.2 86 43.0
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.1e-08 62.8 106 39.6
ClCG09G014350 Citrullus lanatus HOM05D004517 ORTHO05D005366 2.1e-08 62.8 72 50.0
Dinv24268 Davidia involucrata HOM05D004517 ORTHO05D005366 2.1e-08 62.8 100 54.0
Lsat_1_v5_gn_9_118341 Lactuca sativa HOM05D004517 ORTHO05D005366 2.1e-08 62.8 79 50.6
TWI59G1197 Tripterygium wilfordii HOM05D004517 ORTHO05D005366 2.1e-08 62.8 87 43.7
Duzib132G0873 Durio zibethinus HOM05D004517 ORTHO05D005366 2.7e-08 62.4 95 42.1
ECA240G0862 Erigeron canadensis HOM05D004517 ORTHO05D005366 2.7e-08 62.4 71 47.9
FvH4_5g29610 Fragaria vesca HOM05D004517 ORTHO05D005366 3.5e-08 62.0 85 44.7
FAN04G1222 Fragaria x ananassa HOM05D004517 ORTHO05D005366 3.5e-08 62.0 85 44.7
FAN18G2310 Fragaria x ananassa HOM05D004517 ORTHO05D005366 3.5e-08 62.0 85 44.7
Sabra03G0011100 Salix brachista HOM05D004517 ORTHO05D005366 3.5e-08 62.0 75 44.0
Migut.B00843 Erythranthe guttata HOM05D004517 ORTHO05D005366 7.8e-08 60.8 83 47.0
FAN08G3228 Fragaria x ananassa HOM05D004517 ORTHO05D005366 7.8e-08 60.8 85 44.7
Gohir.A12G032100 Gossypium hirsutum HOM05D004517 ORTHO05D005366 7.8e-08 60.8 78 42.3
Gohir.D12G040200 Gossypium hirsutum HOM05D004517 ORTHO05D005366 7.8e-08 60.8 78 42.3
Potri.003G019600 Populus trichocarpa HOM05D004517 ORTHO05D005366 7.8e-08 60.8 77 42.9
QL10p026162 Quercus lobata HOM05D004517 ORTHO05D005366 7.8e-08 60.8 104 36.5
TAR381G0217 Trochodendron aralioides HOM05D004517 ORTHO05D005366 7.8e-08 60.8 78 46.2
Haze_01662 Corylus avellana HOM05D004517 ORTHO05D005366 1.0e-07 60.5 84 40.5
FAN13G2755 Fragaria x ananassa HOM05D004517 ORTHO05D005366 1.0e-07 60.5 86 44.2
Thecc.02G039300 Theobroma cacao HOM05D004517 ORTHO05D005366 1.3e-07 60.1 93 41.9
MELO3C014379.2 Cucumis melo HOM05D004517 ORTHO05D005366 1.7e-07 59.7 71 45.1
SalBow6G5703 Salvia bowleyana HOM05D004517 ORTHO05D005366 2.3e-07 59.3 71 46.5
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 5.1e-07 58.2 76 38.2
Sabra01G0162600 Salix brachista HOM05D004517 ORTHO05D005366 5.1e-07 58.2 92 38.0
Prupe.1G567400 Prunus persica HOM05D004517 ORTHO05D005366 8.6e-07 57.4 71 43.7
CAN.G1577.11 Capsicum annuum HOM05D004517 ORTHO05D005366 1.1e-06 57.0 71 49.3
Sed0012766 Sechium edule HOM05D004517 ORTHO05D005366 1.5e-06 56.6 78 42.3
QL04p096680 Quercus lobata HOM05D004517 ORTHO05D005366 1.9e-06 56.2 65 58.5
CANSAT11G0269 Cannabis sativa HOM05D004517 ORTHO05D005366 2.5e-06 55.8 70 40.0
CiPaw.06G148000 Carya illinoinensis HOM05D004517 ORTHO05D005366 2.5e-06 55.8 86 39.5
Duzib052G0369 Durio zibethinus HOM05D004517 ORTHO05D005366 2.5e-06 55.8 76 42.1
Lj6g0021954 Lotus japonicus HOM05D004517 ORTHO05D005366 2.5e-06 55.8 63 46.0
PGR042G1879 Punica granatum HOM05D004517 ORTHO05D005366 2.5e-06 55.8 70 45.7
TWI14G0624 Tripterygium wilfordii HOM05D004517 ORTHO05D005366 2.5e-06 55.8 94 37.2
CiPaw.05G043700 Carya illinoinensis HOM05D004517 ORTHO05D005366 3.3e-06 55.5 86 38.4
Lalb_Chr12g0204431 Lupinus albus HOM05D004517 ORTHO05D005366 3.3e-06 55.5 67 52.2
Sed0014676 Sechium edule HOM05D004517 ORTHO05D005366 3.3e-06 55.5 97 47.4
THA.LOC104798997 Tarenaya hassleriana HOM05D004517 ORTHO05D005366 4.3e-06 55.1 78 41.0
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 5.6e-06 54.7 80 41.2


User provided reference genes

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