Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1999.2 1008 100.0
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 982 81.0
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 983 78.5
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1558.1 983 78.5
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 982 78.0
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1548.9 983 78.0
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1536.2 980 77.7
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1518.8 980 76.1
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1515.7 980 75.6
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1511.5 981 76.7
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1511.1 980 75.7
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1508.0 982 74.8
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1506.9 982 76.3
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1505.7 980 75.5
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1495.3 982 75.6
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1493.8 981 75.7
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1491.1 980 75.0
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1489.9 1010 72.1
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1486.9 980 74.6
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1481.8 980 74.5
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1481.8 982 74.5
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1479.5 983 73.7
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1477.2 980 74.0
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1475.7 982 73.6
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1475.7 982 74.9
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1473.8 982 73.7
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1473.0 982 73.9
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1471.8 983 73.2
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1471.8 983 73.1
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1471.8 982 74.3
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1471.1 980 74.3
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1466.8 984 73.5
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1465.7 980 75.1
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1464.9 980 74.1
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1464.1 983 73.1
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1462.2 982 74.3
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1459.5 980 73.6
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1458.7 981 73.3
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1457.2 980 72.6
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1457.2 981 73.3
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1455.3 980 72.7
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1454.9 982 72.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1453.3 980 73.1
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1452.2 981 72.6
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1451.8 983 72.7
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1448.7 981 72.9
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1447.6 994 72.2
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1445.6 979 72.7
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1445.6 979 72.7
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1444.1 981 72.5
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1444.1 981 72.8
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1441.8 978 72.7
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1439.9 981 71.5
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1439.5 978 72.7
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1438.7 981 72.3
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1437.6 980 71.5
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1436.8 981 71.5
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1434.1 981 72.0
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1433.3 980 73.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1433.3 990 70.9
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1429.8 980 73.0
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1425.2 978 72.4
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1423.7 993 72.1
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1423.7 982 72.1
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1423.3 1007 70.1
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1422.5 981 70.6
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1422.1 984 70.5
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1420.6 966 72.6
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1420.2 980 71.7
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1419.4 982 71.0
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1419.1 990 71.7
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1417.1 980 72.0
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1415.6 989 71.6
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1415.6 980 71.9
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1413.7 980 71.7
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1412.9 981 71.8
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1411.4 981 72.0
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1411.0 1064 67.1
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1411.0 986 71.2
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1408.7 983 71.3
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1407.9 981 71.4
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1406.7 981 71.9
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1406.3 981 71.9
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1406.3 1064 67.1
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1405.6 981 71.8
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1405.6 981 71.8
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1405.6 982 71.9
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1403.3 981 71.8
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1403.3 981 71.8
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1398.3 979 69.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1398.3 979 69.4
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1396.3 981 71.3
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1395.9 982 71.8
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1394.4 982 70.8
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1394.0 981 71.2
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1389.4 1009 69.3
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1386.3 1051 66.1
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1385.9 992 69.5
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1382.1 980 69.9
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1377.8 897 75.4
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1377.1 979 70.5
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1372.5 978 69.0
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1369.4 979 69.9
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1367.4 1001 68.1
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1361.3 993 68.3
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1359.0 1001 69.0
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1323.1 978 66.9
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1285.8 999 64.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1277.3 980 66.9
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1236.5 906 69.6
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1215.3 791 75.3
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1208.7 980 64.1
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1130.2 690 81.2
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1112.4 717 76.7
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1112.1 672 81.1
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1096.6 985 55.8
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1077.4 980 55.2
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 9.2e-307 1057.0 1022 52.9
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 3.9e-305 1051.6 987 53.9
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 6.6e-305 1050.8 986 54.2
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.1e-270 937.2 818 60.1
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 9.3e-267 924.1 654 70.2
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.6e-266 923.3 614 75.4
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 6.9e-262 907.9 737 61.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 9.7e-248 860.9 633 69.4
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.7e-236 823.5 500 79.2
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.7e-231 807.0 747 55.4
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 4.4e-208 729.2 979 45.1
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 7.8e-189 665.2 527 63.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.4e-167 592.4 429 69.7
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.5e-150 537.3 304 84.5
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 3.8e-135 486.9 491 53.4
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.2e-130 471.1 310 74.2
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 1.2e-88 332.4 220 71.8
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 8.6e-63 246.5 136 80.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.3e-62 244.6 205 61.5
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.9e-54 218.8 179 59.2
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 6.4e-50 203.8 139 67.6
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 1.9e-33 149.1 160 51.9
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 7.9e-32 143.7 135 55.6
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 3.0e-31 141.7 156 49.4
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 5.3e-28 131.0 73 82.2
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.4e-25 122.9 97 61.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.4e-15 89.7 73 61.6
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 4.8e-13 81.3 47 80.9
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.8e-12 79.3 49 69.4
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.2e-11 76.6 77 45.5
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 1.4e-09 69.7 143 35.0
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.2e-08 66.6 33 90.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 3.9e-07 61.6 39 71.8


User provided reference genes

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