Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.2e-153 546.6 287 100.0
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 8.4e-80 301.2 249 65.9
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 2.5e-79 299.7 257 63.4
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.3e-77 293.9 208 73.1
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 4.3e-76 288.9 263 64.3
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 5.6e-76 288.5 211 69.2
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 5.6e-76 288.5 230 65.2
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 5.6e-76 288.5 230 65.2
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 7.4e-76 288.1 205 72.7
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 9.6e-76 287.7 229 65.1
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.3e-75 287.3 263 64.6
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 6.2e-75 285.0 224 67.0
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.1e-74 284.3 260 62.7
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 4.0e-74 282.3 206 69.9
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 6.9e-74 281.6 211 67.3
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 9.0e-74 281.2 209 71.3
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.2e-73 280.8 284 60.2
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.2e-73 280.8 205 71.7
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.5e-73 280.4 203 69.5
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.5e-73 280.4 203 68.5
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.5e-73 280.4 263 62.4
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 3.4e-73 279.3 204 71.1
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 3.4e-73 279.3 248 62.5
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 7.6e-73 278.1 203 68.0
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 7.6e-73 278.1 203 68.0
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.0e-72 277.7 228 69.7
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.7e-72 276.9 203 70.0
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 2.2e-72 276.6 220 67.3
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.9e-72 276.2 203 67.5
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.8e-72 275.8 203 70.0
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 3.8e-72 275.8 247 62.3
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 3.8e-72 275.8 201 67.7
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 4.9e-72 275.4 198 70.2
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 6.5e-72 275.0 203 67.0
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 8.4e-72 274.6 205 68.8
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 2.5e-71 273.1 211 69.2
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 2.5e-71 273.1 260 61.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 4.2e-71 272.3 237 63.7
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 4.2e-71 272.3 204 70.1
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 4.2e-71 272.3 203 66.5
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 7.1e-71 271.6 208 67.8
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.2e-70 270.8 258 58.1
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.7e-70 269.6 223 65.5
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 2.7e-70 269.6 205 69.3
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 4.6e-70 268.9 198 69.2
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 4.6e-70 268.9 198 69.2
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 4.6e-70 268.9 197 71.1
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 6.0e-70 268.5 228 62.7
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 7.9e-70 268.1 256 59.8
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.3e-69 267.3 195 71.3
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.3e-69 267.3 203 70.9
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.8e-69 266.9 208 64.9
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.3e-69 266.5 233 63.1
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.3e-69 266.5 248 62.1
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.3e-69 266.5 257 58.8
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.3e-69 266.5 203 68.0
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.1e-69 265.4 257 58.4
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.7e-69 264.6 199 66.8
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.1e-68 264.2 223 65.0
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.5e-68 263.1 291 52.2
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 4.3e-68 262.3 202 66.8
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 4.3e-68 262.3 178 76.4
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 7.4e-68 261.5 208 66.8
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 7.4e-68 261.5 245 62.9
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 9.7e-68 261.2 203 66.5
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.3e-67 260.8 196 69.9
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 2.2e-67 260.0 197 68.0
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.2e-67 260.0 219 65.8
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 2.8e-67 259.6 203 65.0
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 3.7e-67 259.2 203 65.0
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 3.7e-67 259.2 202 66.8
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.7e-67 259.2 202 66.8
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 4.8e-67 258.8 206 66.0
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.3e-67 258.5 202 65.8
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 8.2e-67 258.1 202 66.3
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 8.2e-67 258.1 202 66.3
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 8.2e-67 258.1 203 64.0
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 8.2e-67 258.1 247 58.3
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.8e-66 256.9 202 66.3
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.8e-66 256.9 205 64.9
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.4e-66 256.5 245 62.0
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 5.3e-66 255.4 219 63.9
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 9.0e-66 254.6 240 60.0
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.2e-65 254.2 203 64.5
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.5e-65 253.8 219 63.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.5e-65 253.8 219 63.5
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.5e-65 253.8 203 63.5
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.5e-65 253.8 203 64.0
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 1.5e-65 253.8 203 64.0
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 4.5e-65 252.3 258 58.1
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 4.5e-65 252.3 250 58.4
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 5.9e-65 251.9 177 71.8
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 5.9e-65 251.9 177 71.2
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.7e-64 250.4 201 67.7
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 3.8e-64 249.2 213 62.4
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.8e-64 249.2 204 65.2
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 5.0e-64 248.8 234 59.8
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.1e-63 247.7 203 64.5
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.2e-63 246.1 215 60.9
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 4.2e-63 245.7 173 69.9
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.2e-62 244.2 173 71.7
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 1.6e-62 243.8 202 63.9
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 6.1e-62 241.9 202 63.4
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 6.1e-62 241.9 202 64.9
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.0e-61 241.1 202 63.9
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.0e-61 241.1 173 73.4
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.3e-61 240.0 202 62.9
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 5.1e-61 238.8 202 62.9
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 5.1e-61 238.8 202 62.9
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 3.3e-60 236.1 251 54.2
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 3.7e-59 232.6 248 54.4
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.4e-58 230.7 176 66.5
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.4e-58 229.9 204 61.3
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 9.7e-52 208.0 247 50.2
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 6.5e-48 195.3 178 55.6
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.1e-47 194.5 199 50.8
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.2e-47 192.6 184 54.3
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 3.0e-45 186.4 193 52.3
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 2.0e-44 183.7 136 71.3
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.1e-42 177.9 247 47.8
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 7.0e-42 175.3 164 59.1
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 3.5e-41 172.9 127 67.7
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.7e-40 170.6 178 51.7
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.5e-39 167.5 175 53.7
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.8e-37 160.6 120 68.3
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 8.9e-21 105.1 80 65.0
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.7e-19 99.8 65 69.2
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 3.9e-16 89.7 77 67.5
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.0e-16 89.4 105 46.7
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.1e-15 88.2 126 42.9
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 4.7e-14 82.8 112 44.6
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 9.8e-12 75.1 129 31.8
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 6.4e-11 72.4 46 73.9
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 8.3e-11 72.0 110 42.7
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 2.3e-08 63.9 132 31.8


User provided reference genes

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