Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0005590 Simmondsia chinensis HOM05D007630 ORTHO05D009637 5.5e-98 360.9 175 100.0
Cc02_g23840 Coffea canephora HOM05D007630 ORTHO05D009637 1.3e-62 243.4 150 79.3
AUR62032498 Chenopodium quinoa HOM05D007630 ORTHO05D009637 1.7e-62 243.0 152 78.3
QL02p103828 Quercus lobata HOM05D007630 ORTHO05D009637 2.8e-62 242.3 150 78.0
Phvul.003G090300 Phaseolus vulgaris HOM05D007630 ORTHO05D009637 3.7e-62 241.9 150 78.7
CAN.G1379.16 Capsicum annuum HOM05D007630 ORTHO05D009637 4.8e-62 241.5 150 79.3
GSVIVG01023115001 Vitis vinifera HOM05D007630 ORTHO05D009637 6.3e-62 241.1 152 77.6
Nitab4.5_0001085g0080 Nicotiana tabacum HOM05D007630 ORTHO05D009637 8.2e-62 240.7 150 78.0
Hund29384 Selenicereus undatus HOM05D007630 ORTHO05D009637 1.1e-61 240.4 152 78.3
Hund29386 Selenicereus undatus HOM05D007630 ORTHO05D009637 1.1e-61 240.4 152 78.3
Glyma.17G003000 Glycine max HOM05D007630 ORTHO05D009637 1.4e-61 240.0 150 79.3
AUR62040114 Chenopodium quinoa HOM05D007630 ORTHO05D009637 2.4e-61 239.2 152 77.6
Glyma.07G270900 Glycine max HOM05D007630 ORTHO05D009637 2.4e-61 239.2 150 76.7
Nn5g27111 Nelumbo nucifera HOM05D007630 ORTHO05D009637 2.4e-61 239.2 148 79.1
Nitab4.5_0006947g0030 Nicotiana tabacum HOM05D007630 ORTHO05D009637 5.3e-61 238.0 150 77.3
Actinidia11717 Actinidia chinensis HOM05D007630 ORTHO05D009637 7.0e-61 237.7 150 78.7
Hma1.2p1_0157F.1_g069300 Hydrangea macrophylla HOM05D007630 ORTHO05D009637 7.0e-61 237.7 150 76.0
VMungo1215G0090 Vigna mungo HOM05D007630 ORTHO05D009637 9.1e-61 237.3 150 78.0
Solyc01g102720.3 Solanum lycopersicum HOM05D007630 ORTHO05D009637 2.0e-60 236.1 150 76.7
Sopen01g045140 Solanum pennellii HOM05D007630 ORTHO05D009637 2.6e-60 235.7 150 76.7
TPR.G5932 Trifolium pratense HOM05D007630 ORTHO05D009637 2.6e-60 235.7 152 76.3
Ciclev10002337m.g Citrus clementina HOM05D007630 ORTHO05D009637 3.5e-60 235.3 152 75.7
Peaxi162Scf00194g00929 Petunia axillaris HOM05D007630 ORTHO05D009637 4.5e-60 235.0 150 76.0
Rhsim11G0114600 Rhododendron simsii HOM05D007630 ORTHO05D009637 4.5e-60 235.0 150 78.0
CSS0024546 Camellia sinensis var. sinensis HOM05D007630 ORTHO05D009637 5.9e-60 234.6 148 76.4
PGSC0003DMG400018220 Solanum tuberosum HOM05D007630 ORTHO05D009637 5.9e-60 234.6 150 76.0
Lj4g0008184 Lotus japonicus HOM05D007630 ORTHO05D009637 7.7e-60 234.2 148 77.0
Actinidia17707 Actinidia chinensis HOM05D007630 ORTHO05D009637 1.0e-59 233.8 150 78.0
Psat4g001800 Pisum sativum HOM05D007630 ORTHO05D009637 1.0e-59 233.8 147 76.9
FvH4_5g27180 Fragaria vesca HOM05D007630 ORTHO05D009637 1.3e-59 233.4 154 74.7
FAN18G2712 Fragaria x ananassa HOM05D007630 ORTHO05D009637 1.3e-59 233.4 154 74.7
RcHm_v2.0_Chr7g0218271 Rosa chinensis HOM05D007630 ORTHO05D009637 1.3e-59 233.4 154 74.7
TAR629G1327 Trochodendron aralioides HOM05D007630 ORTHO05D009637 1.3e-59 233.4 152 73.0
Medtr4g134400 Medicago truncatula HOM05D007630 ORTHO05D009637 2.2e-59 232.6 147 76.2
Thecc.06G066000 Theobroma cacao HOM05D007630 ORTHO05D009637 2.2e-59 232.6 150 76.0
Prupe.1G587600 Prunus persica HOM05D007630 ORTHO05D009637 6.5e-59 231.1 158 73.4
arahy.Tifrunner.gnm1.ann1.CDQ02R Arachis hypogaea HOM05D007630 ORTHO05D009637 8.5e-59 230.7 160 72.5
arahy.Tifrunner.gnm1.ann1.XQ55VB Arachis hypogaea HOM05D007630 ORTHO05D009637 8.5e-59 230.7 160 72.5
COL.COLO4_31101 Corchorus olitorius HOM05D007630 ORTHO05D009637 8.5e-59 230.7 155 75.5
Sabra01G0176100 Salix brachista HOM05D007630 ORTHO05D009637 8.5e-59 230.7 150 76.0
FAN04G2951 Fragaria x ananassa HOM05D007630 ORTHO05D009637 1.9e-58 229.6 154 73.4
CANSAT01G1787 Cannabis sativa HOM05D007630 ORTHO05D009637 2.5e-58 229.2 151 74.2
ECA236G0298 Erigeron canadensis HOM05D007630 ORTHO05D009637 2.5e-58 229.2 158 74.1
FAN13G2616 Fragaria x ananassa HOM05D007630 ORTHO05D009637 4.2e-58 228.4 154 73.4
Lj9A243T50 Lonicera japonica HOM05D007630 ORTHO05D009637 7.2e-58 227.6 150 74.0
Manes.06G015300 Manihot esculenta HOM05D007630 ORTHO05D009637 7.2e-58 227.6 152 75.0
Aqoxy6G00011 Aquilegia oxysepala HOM05D007630 ORTHO05D009637 1.2e-57 226.9 152 75.0
MSTRG.16453 Avicennia marina HOM05D007630 ORTHO05D009637 1.6e-57 226.5 152 73.0
Lalb_Chr07g0176861 Lupinus albus HOM05D007630 ORTHO05D009637 2.1e-57 226.1 151 74.8
Potri.004G231000 Populus trichocarpa HOM05D007630 ORTHO05D009637 2.1e-57 226.1 150 74.7
vmacro01631 Vaccinium macrocarpon HOM05D007630 ORTHO05D009637 2.1e-57 226.1 147 76.9
DCAR_001874 Daucus carota HOM05D007630 ORTHO05D009637 2.7e-57 225.7 150 72.0
TWI59G0438 Tripterygium wilfordii HOM05D007630 ORTHO05D009637 6.1e-57 224.6 152 72.4
CDE05G1783 Ceratophyllum demersum HOM05D007630 ORTHO05D009637 8.0e-57 224.2 152 70.4
Migut.B00699 Erythranthe guttata HOM05D007630 ORTHO05D009637 8.0e-57 224.2 154 72.1
Dinv30982 Davidia involucrata HOM05D007630 ORTHO05D009637 1.8e-56 223.0 141 79.4
Atru.chr6.70 Acer truncatum HOM05D007630 ORTHO05D009637 8.8e-56 220.7 153 75.8
Gohir.A05G160300 Gossypium hirsutum HOM05D007630 ORTHO05D009637 8.8e-56 220.7 156 71.2
Gohir.D05G163000 Gossypium hirsutum HOM05D007630 ORTHO05D009637 8.8e-56 220.7 156 71.2
Gorai.009G168000 Gossypium raimondii HOM05D007630 ORTHO05D009637 8.8e-56 220.7 156 71.2
CDE05G2797 Ceratophyllum demersum HOM05D007630 ORTHO05D009637 1.2e-55 220.3 152 69.7
HanXRQChr16g0531021 Helianthus annuus HOM05D007630 ORTHO05D009637 1.2e-55 220.3 155 72.3
Haze_09954 Corylus avellana HOM05D007630 ORTHO05D009637 1.5e-55 219.9 141 76.6
Eucgr.G00050 Eucalyptus grandis HOM05D007630 ORTHO05D009637 2.0e-55 219.5 153 71.2
CSS0032395 Camellia sinensis var. sinensis HOM05D007630 ORTHO05D009637 3.4e-55 218.8 141 75.9
Duzib192G0579 Durio zibethinus HOM05D007630 ORTHO05D009637 1.3e-54 216.9 141 78.0
PGR042G3439 Punica granatum HOM05D007630 ORTHO05D009637 1.3e-54 216.9 147 73.5
Cpa.g.sc246.13 Carica papaya HOM05D007630 ORTHO05D009637 2.2e-54 216.1 151 72.8
Oeu000167.1 Olea europaea HOM05D007630 ORTHO05D009637 8.3e-54 214.2 141 75.9
MD08G1250400 Malus domestica HOM05D007630 ORTHO05D009637 9.1e-53 210.7 159 69.2
Gohir.A10G157500 Gossypium hirsutum HOM05D007630 ORTHO05D009637 7.7e-52 207.6 151 68.2
Gorai.011G090500 Gossypium raimondii HOM05D007630 ORTHO05D009637 7.7e-52 207.6 151 68.2
THA.LOC104809043 Tarenaya hassleriana HOM05D007630 ORTHO05D009637 5.0e-51 204.9 149 67.8
ATR1089G051 Amborella trichopoda HOM05D007630 ORTHO05D009637 8.5e-51 204.1 151 68.9
DCAR_028500 Daucus carota HOM05D007630 ORTHO05D009637 2.1e-49 199.5 149 67.1
PSO170G3600 Papaver somniferum HOM05D007630 ORTHO05D009637 2.1e-49 199.5 167 64.1
AT5G49800 Arabidopsis thaliana HOM05D007630 ORTHO05D009637 1.8e-48 196.4 154 64.9
PSO017G5941 Papaver somniferum HOM05D007630 ORTHO05D009637 5.2e-48 194.9 167 63.5
AL8G23760 Arabidopsis lyrata HOM05D007630 ORTHO05D009637 3.4e-47 192.2 149 66.4
Lsat_1_v5_gn_9_82660 Lactuca sativa HOM05D007630 ORTHO05D009637 5.7e-47 191.4 169 60.4
Carub.0008s0968 Capsella rubella HOM05D007630 ORTHO05D009637 1.3e-46 190.3 153 62.7
CARHR258980 Cardamine hirsuta HOM05D007630 ORTHO05D009637 2.2e-46 189.5 154 62.3
Os11g0245500 Oryza sativa ssp. japonica HOM05D007630 ORTHO05D009637 3.7e-46 188.7 154 61.7
Aa31sc192G10 Aethionema arabicum HOM05D007630 ORTHO05D009637 6.3e-46 188.0 154 63.6
Sp6g11150 Schrenkiella parvula HOM05D007630 ORTHO05D009637 1.1e-45 187.2 154 64.3
Gohir.D10G083200 Gossypium hirsutum HOM05D007630 ORTHO05D009637 1.7e-43 179.9 151 62.3
SGA_v2.0_scaffold254G45223 Striga asiatica HOM05D007630 ORTHO05D009637 2.0e-39 166.4 147 59.9
Oeu043594.1 Olea europaea HOM05D007630 ORTHO05D009637 2.9e-38 162.5 92 84.8
Zm00001eb168190 Zea mays HOM05D007630 ORTHO05D009637 1.1e-37 160.6 125 63.2
SEGI_35985 Sequoiadendron giganteum HOM05D007630 ORTHO05D009637 3.2e-37 159.1 144 54.9
Mapoly0105s0042 Marchantia polymorpha HOM05D007630 ORTHO05D009637 5.4e-29 131.7 139 46.0
Cfa004415 Carpinus fangiana HOM05D000089 ORTHO05D000104 2.7e-28 129.4 88 75.0
SMO198G0095 Selaginella moellendorffii HOM05D007630 ORTHO05D009637 8.1e-25 117.9 142 43.0
Dinv29656 Davidia involucrata HOM05D007630 ORTHO05D009637 1.5e-18 97.1 123 50.4
MBI06_g17062_MAGBIO Magnolia biondii HOM05D007630 ORTHO05D009637 1.5e-18 97.1 53 83.0
HanXRQChr09g0245071 Helianthus annuus HOM05D000066 ORTHO05D000055 9.6e-10 67.8 57 57.9
SEGI_15718 Sequoiadendron giganteum HOM05D007630 ORTHO05D009637 5.2e-08 62.0 142 30.3


User provided reference genes

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