Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0005210 Simmondsia chinensis HOM05D007912 ORTHO05D010251 8.9e-170 600.1 290 100.0
Sc18g0005300 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.0e-66 255.0 236 56.8
Sc22g0004270 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.3e-47 191.8 177 52.5
Sc05g0003960 Simmondsia chinensis HOM05D007912 ORTHO05D010251 6.2e-46 188.7 179 54.2
Sc05g0004290 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.8e-45 187.2 177 57.1
Sc07g0004870 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.4e-44 183.0 140 60.0
Sc02g0004890 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.3e-43 181.0 156 59.0
Sc05g0004710 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.7e-43 180.6 151 57.0
Sc02g0005760 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.0e-40 171.4 157 54.8
Sc10g0007100 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.0e-40 169.9 130 65.4
Sc03g0004870 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.3e-39 166.4 145 57.2
Sc04g0004730 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.1e-37 159.8 126 64.3
Sc23g0003790 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.9e-35 153.3 164 47.6
Sc12g0007100 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.7e-35 152.9 116 63.8
Sc06g0004280 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.3e-32 143.7 132 59.1
Sc02g0004790 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.3e-31 139.8 109 56.9
Sc02g0004810 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.1e-29 134.8 144 47.9
Sc02g0004480 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.5e-28 131.0 155 47.7
Sc02g0005270 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.0e-28 130.6 130 50.8
Sc24g0001190 Simmondsia chinensis HOM05D007912 ORTHO05D010251 9.9e-28 128.3 121 53.7
Sc02g0004930 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.3e-27 127.9 117 56.4
Sc02g0004970 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.9e-27 126.7 108 56.5
Sc12g0008170 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.8e-27 126.3 100 58.0
Sc11g0004200 Simmondsia chinensis HOM05D007912 ORTHO05D010251 6.4e-27 125.6 111 58.6
Sc17g0003150 Simmondsia chinensis HOM05D007912 ORTHO05D010251 8.4e-27 125.2 111 61.3
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 1.9e-26 124.0 289 29.8
Sc03g0004300 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.5e-25 119.8 120 47.5
Sc26g0003020 Simmondsia chinensis HOM05D007912 ORTHO05D010251 4.6e-25 119.4 92 63.0
Sc17g0003520 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.8e-25 118.6 105 54.3
Sc13g0007430 Simmondsia chinensis HOM05D007912 ORTHO05D010251 6.6e-24 115.5 114 54.4
Sc14g0004880 Simmondsia chinensis HOM05D007912 ORTHO05D010251 8.6e-24 115.2 96 56.2
Sc24g0001130 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.1e-23 114.8 121 50.4
Sc05g0004480 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.9e-23 114.0 120 52.5
Sc14g0002490 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.9e-23 114.0 112 50.0
Sc01g0005460 Simmondsia chinensis HOM05D007912 ORTHO05D010251 9.6e-23 111.7 96 60.4
Sc07g0004510 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.8e-22 110.2 112 52.7
Sc22g0004320 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.8e-21 107.5 102 56.9
Sc17g0003130 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.4e-21 107.1 110 52.7
Sc06g0004250 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.1e-21 106.7 115 46.1
Sc05g0005690 Simmondsia chinensis HOM05D007912 ORTHO05D010251 4.0e-21 106.3 109 51.4
Sc11g0004150 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.5e-20 104.4 100 55.0
Sc02g0004980 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.4e-20 103.2 89 57.3
Sc20g0002780 Simmondsia chinensis HOM05D007912 ORTHO05D010251 4.4e-20 102.8 82 56.1
Sc15g0002320 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.7e-19 100.9 93 53.8
Sc22g0004420 Simmondsia chinensis HOM05D007912 ORTHO05D010251 6.4e-19 99.0 91 49.5
Sc04g0004840 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.4e-18 97.1 78 61.5
Sc08g0005440 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.1e-18 95.5 100 52.0
Sc13g0008210 Simmondsia chinensis HOM05D007912 ORTHO05D010251 9.3e-18 95.1 83 56.6
Sc11g0003920 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.1e-17 94.0 66 66.7
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.0e-16 91.7 290 27.9
Sc02g0004860 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.7e-16 90.9 86 51.2
Sc01g0006550 Simmondsia chinensis HOM05D007912 ORTHO05D010251 5.1e-16 89.4 108 47.2
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 6.6e-16 89.0 290 28.6
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 1.1e-15 88.2 266 27.4
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 2.5e-15 87.0 269 27.9
EL10Ac2g03892 Beta vulgaris HOM05D020966 ORTHO05D023391 3.3e-15 86.7 276 26.4
Sc24g0001000 Simmondsia chinensis HOM05D003009 ORTHO05D001701 3.3e-15 86.7 58 65.5
Sc05g0005050 Simmondsia chinensis HOM05D007912 ORTHO05D010251 9.6e-15 85.1 80 52.5
COL.COLO4_35525 Corchorus olitorius HOM05D007843 ORTHO05D003639 3.6e-14 83.2 190 30.5
Sc10g0007130 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.8e-13 80.9 71 56.3
Ah.11g044760 Amaranthus hybridus HOM05D020966 ORTHO05D023391 4.0e-13 79.7 304 27.3
Sc17g0003650 Simmondsia chinensis HOM05D007912 ORTHO05D010251 9.0e-13 78.6 74 55.4
Sc21g0003860 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.2e-12 78.2 123 38.2
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 3.4e-12 76.6 213 30.5
Sc08g0004760 Simmondsia chinensis HOM05D007912 ORTHO05D010251 9.9e-12 75.1 67 53.7
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.3e-11 74.7 260 25.8
Sc17g0002860 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.3e-11 74.7 66 53.0
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 1.7e-11 74.3 223 26.9
Sc01g0006690 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.7e-11 74.3 64 57.8
Sc24g0001220 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.7e-11 74.3 93 45.2
RcHm_v2.0_Chr1g0350201 Rosa chinensis HOM05D009149 ORTHO05D003639 2.9e-11 73.6 229 26.6
RcHm_v2.0_Chr6g0291271 Rosa chinensis HOM05D009149 ORTHO05D003639 3.8e-11 73.2 229 26.2
RcHm_v2.0_Chr2g0105541 Rosa chinensis HOM05D009149 ORTHO05D003639 6.4e-11 72.4 229 26.2
RcHm_v2.0_Chr3g0493631 Rosa chinensis HOM05D009149 ORTHO05D003639 1.4e-10 71.2 229 27.5
RcHm_v2.0_Chr4g0410321 Rosa chinensis HOM05D009149 ORTHO05D003639 1.4e-10 71.2 258 25.2
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 1.9e-10 70.9 282 25.2
FvH4_1g29795 Fragaria vesca HOM05D009149 ORTHO05D003639 2.4e-10 70.5 214 27.1
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 2.4e-10 70.5 216 30.6
RcHm_v2.0_Chr2g0131351 Rosa chinensis HOM05D009149 ORTHO05D003639 5.4e-10 69.3 212 26.4
FvH4_4g18552 Fragaria vesca HOM05D009149 ORTHO05D003639 7.1e-10 68.9 225 26.2
Sc12g0008150 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.1e-10 68.9 55 56.4
Sc05g0004680 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.7e-09 67.0 61 52.5
RcHm_v2.0_Chr4g0419521 Rosa chinensis HOM05D009149 ORTHO05D003639 7.9e-09 65.5 215 24.7
RcHm_v2.0_Chr5g0038381 Rosa chinensis HOM05D001371 ORTHO05D001319 7.9e-09 65.5 206 29.6
Sc10g0007340 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.9e-09 65.5 60 53.3
Sc17g0003260 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.0e-08 65.1 42 64.3
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 3.0e-08 63.5 222 27.5
Sc01g0006390 Simmondsia chinensis HOM05D007912 ORTHO05D010251 8.7e-08 62.0 61 45.9
Sc05g0004430 Simmondsia chinensis HOM05D007912 ORTHO05D010251 8.7e-08 62.0 68 50.0
Lj6g0008848 Lotus japonicus HOM05D001371 ORTHO05D001319 2.5e-07 60.5 248 30.2
FAN25G0588 Fragaria x ananassa HOM05D016656 ORTHO05D003639 3.3e-07 60.1 129 31.8
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 9.6e-07 58.5 218 26.6
RcHm_v2.0_Chr5g0004321 Rosa chinensis HOM05D008702 ORTHO05D003639 9.6e-07 58.5 223 25.1
RcHm_v2.0_Chr5g0038741 Rosa chinensis HOM05D001371 ORTHO05D001319 1.6e-06 57.8 255 28.2
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 2.1e-06 57.4 218 27.1
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 3.7e-06 56.6 218 26.6
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 6.2e-06 55.8 218 26.1
Sc08g0005480 Simmondsia chinensis HOM05D007912 ORTHO05D010251 6.2e-06 55.8 49 51.0
Sc02g0004160 Simmondsia chinensis HOM05D007912 ORTHO05D010251 8.1e-06 55.5 50 54.0


User provided reference genes

Program Settings