Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 6360.0 3194 100.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3755.3 3300 61.0
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3659.8 3252 59.5
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3577.7 3290 59.0
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3524.6 3296 58.2
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3510.7 3294 58.5
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3508.4 3283 58.3
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3499.9 3278 58.7
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3494.5 3260 58.5
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3492.6 3261 57.9
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3491.8 3287 58.1
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3464.1 3317 56.8
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3458.7 3264 57.3
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3458.3 3247 58.1
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3457.2 3276 57.8
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3447.1 3282 57.9
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3427.5 3276 57.3
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3426.3 3259 57.6
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3425.6 3259 57.5
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3424.4 3276 57.1
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3421.7 3278 57.1
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3413.2 3271 57.4
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3407.8 3244 56.9
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3394.4 3277 57.0
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3394.0 3308 56.6
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3393.2 3281 57.0
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3347.0 3264 55.8
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3338.9 3268 56.2
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3328.1 3253 55.8
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3326.6 3255 57.1
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3322.3 3252 55.8
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3306.5 3275 55.8
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3302.7 3261 55.8
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3287.7 3256 55.6
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3286.5 3410 54.6
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3277.3 3264 55.2
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3273.4 3334 54.9
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3271.5 3270 55.2
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3253.8 3287 53.7
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3247.6 3288 54.4
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3232.2 3264 54.4
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3224.1 3290 54.9
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3223.0 3274 53.7
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3208.3 3281 53.9
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3202.1 3274 54.6
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3200.2 3292 54.6
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3187.9 3257 54.9
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3174.4 2906 58.7
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3166.7 3224 54.7
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3158.6 3262 53.6
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3158.2 3274 53.1
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3152.5 3269 53.3
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3151.3 3256 53.9
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3150.9 3254 53.8
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3141.3 3251 53.6
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3137.8 3255 53.8
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3127.4 3273 53.6
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3119.3 3229 53.5
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3118.6 3249 53.9
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3115.1 3229 53.5
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3114.3 3229 53.2
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3112.4 3228 53.3
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3088.1 3313 51.8
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3088.1 3116 55.2
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3085.8 3275 53.2
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3075.8 3271 53.0
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3040.4 3255 52.4
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3034.6 3227 53.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3015.7 3262 52.1
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2882.4 3028 52.5
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2874.0 2717 56.9
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2819.3 2438 61.4
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2686.0 3111 50.2
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2671.0 2993 51.3
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2594.3 3271 47.6
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2538.1 2029 66.0
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2516.9 3119 47.5
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2516.5 3261 46.0
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2441.4 2403 55.3
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2396.7 2428 54.5
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2372.8 2454 52.6
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2175.2 1602 71.1
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2160.2 2568 49.2
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2091.2 3026 42.9
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2060.4 2003 56.1
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2058.5 1687 63.1
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1948.7 1504 67.8
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1910.2 1464 67.8
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1857.4 3406 36.7
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1849.7 1801 58.0
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1847.4 2838 42.0
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1844.7 3348 36.9
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1776.9 1444 65.8
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1723.8 3090 37.1
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1456.8 1004 75.0
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1330.1 2193 39.6
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1298.5 1735 43.9
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1258.8 1543 47.7
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1243.0 842 74.5
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1210.7 1254 53.5
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1177.5 1019 61.5
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1169.5 832 72.0
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1117.1 982 60.4
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1110.1 1543 43.6
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 3.6e-304 1050.0 1128 53.5
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.4e-295 1021.5 967 58.0
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.8e-293 1013.8 3363 27.6
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 7.0e-292 1009.2 852 61.9
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 5.8e-262 909.8 1510 39.5
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 8.6e-258 896.0 1501 38.6
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 2.8e-240 837.8 1309 41.9
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.0e-234 819.3 895 50.5
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 7.6e-230 803.1 752 57.4
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 7.2e-196 690.3 441 77.3
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 6.7e-194 683.7 413 83.3
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 5.2e-154 551.2 850 41.4
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.1e-146 526.9 815 42.0
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.1e-146 525.4 718 43.5
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 7.3e-140 504.2 833 38.8
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.1e-138 500.4 835 39.5
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 6.6e-133 481.1 930 35.9
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.1e-130 472.2 327 72.5
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.9e-119 436.4 270 78.5
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.7e-118 432.6 250 85.2
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 3.9e-117 428.7 453 51.4
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.3e-115 423.7 802 34.7
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 9.3e-111 407.5 821 34.8
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 8.1e-107 394.4 877 32.8
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 5.5e-103 381.7 415 52.0
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.6e-102 380.2 574 41.6
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 2.4e-98 366.3 559 42.2
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.1e-92 347.4 412 49.3
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 2.8e-91 342.8 327 57.2
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 2.2e-88 333.2 217 78.8
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 2.9e-88 332.8 244 66.4
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 4.6e-86 325.5 817 31.8
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 2.5e-84 319.7 301 58.8
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-81 309.3 564 34.4
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.3e-80 307.4 318 53.5
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 4.2e-79 302.4 251 59.8
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 1.7e-75 290.4 572 35.7
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 8.5e-72 278.1 288 53.5
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-71 277.3 322 49.4
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 1.2e-70 274.2 356 44.9
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.4e-69 270.8 781 29.2
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.7e-62 245.7 965 26.9
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-58 234.6 155 76.1
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 4.1e-58 232.6 255 47.1
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.8e-51 209.9 700 28.4
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.5e-47 197.6 386 34.7
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 8.6e-40 171.8 200 50.5
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 8.0e-38 165.2 530 27.7
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 6.0e-33 149.1 118 65.3
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 8.3e-27 128.6 92 71.7
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 1.9e-26 127.5 82 75.6
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.6e-22 114.4 86 66.3
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 3.6e-22 113.2 115 53.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 4.0e-21 109.8 105 58.1
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.2e-21 109.4 111 47.7
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 9.9e-20 105.1 82 64.6
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 9.9e-20 105.1 69 78.3
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.2e-19 104.0 84 63.1
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 4.9e-19 102.8 115 50.4
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.6e-14 86.7 91 45.1
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.8e-13 84.3 144 34.0
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 3.8e-11 76.6 80 50.0
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 1.9e-10 74.3 65 56.9
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.4e-10 73.9 51 70.6
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 9.2e-10 72.0 52 59.6
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 3.0e-08 67.0 45 73.3
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 4.3e-07 63.2 77 46.8
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 3.6e-06 60.1 84 40.5


User provided reference genes

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